View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16403_low_2 (Length: 461)
Name: NF16403_low_2
Description: NF16403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16403_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 184 - 454
Target Start/End: Original strand, 34262725 - 34262995
Alignment:
| Q |
184 |
tggattctaatacttattgttgatttttatggtctttagttaattttccccaatgaggcctattctaatacagttatgcgctaaatatagtcagaaattg |
283 |
Q |
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| T |
34262725 |
tggattttaatatttattgttgatttttatggtctttagttaattttccccaatgaggcctattctaatacagttatgcgctaaatatagtcagaaattg |
34262824 |
T |
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| Q |
284 |
gtttgcctagtgaaatttaaacgctgacacatttcttatgacagggtcgcggaatagaaacaaatctttatgctcaatttaaatgtgattctatcaagat |
383 |
Q |
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| T |
34262825 |
gtttgcctggtgaaatttaaacgctgacacatttcttatgacagggtcgcggaatagaaacaaatctttatgctcaatttagatgtgattctatgaagat |
34262924 |
T |
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| Q |
384 |
tgcaatggtaattctttttaccatttttcaacttgcttcttaaaatacgagaaatttgatactgatgatgt |
454 |
Q |
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| T |
34262925 |
tgcaatggtaattctttttaccatttttcaacttgcttcttaaaatacgagaaatttgatactgatgatgt |
34262995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 34252651 - 34252742
Alignment:
| Q |
309 |
gacacatttcttatgacagggtcgcggaatagaaacaaatctttatgctcaatttaaatgtgattctatcaagattgcaatggtaattcttt |
400 |
Q |
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| T |
34252651 |
gacacatctcttatgacaggggcgcggaatagaaacaaatctctatgctcaatttaaatgtgattctatgaagattgcaatggtatttcttt |
34252742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34262657 - 34262717
Alignment:
| Q |
17 |
tattgttcgtattgagatttagtgactttaagatggaaaagttacgatgactttagtgtaa |
77 |
Q |
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| T |
34262657 |
tattgttcatattgagatttagtgactttaagatggaaaagttgcgatgactttagtgtaa |
34262717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 20859382 - 20859311
Alignment:
| Q |
324 |
acagggtcgcggaatagaaacaaatctttatgctcaatttaaatgtgattctatcaagattgcaatggtaat |
395 |
Q |
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| T |
20859382 |
acagggccgcggaattgaaacaaacctctatgctcaatttaaatgtgattcccttaagattggaatggtaat |
20859311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 43102674 - 43102718
Alignment:
| Q |
27 |
attgagatttagtgactttaagatggaaaagttacgatgacttta |
71 |
Q |
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| T |
43102674 |
attgagattaagtgattttaagatggaaaaatcacgatgacttta |
43102718 |
T |
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