View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16403_low_4 (Length: 300)
Name: NF16403_low_4
Description: NF16403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16403_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 10254983 - 10254710
Alignment:
| Q |
19 |
aacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgg |
118 |
Q |
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| T |
10254983 |
aacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgg |
10254884 |
T |
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| Q |
119 |
gtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgca |
218 |
Q |
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| T |
10254883 |
gtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgca |
10254784 |
T |
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| Q |
219 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254783 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10254710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 10230842 - 10231115
Alignment:
| Q |
19 |
aacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgg |
118 |
Q |
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|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
10230842 |
aacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgg |
10230941 |
T |
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| Q |
119 |
gtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgca |
218 |
Q |
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| T |
10230942 |
gtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagggagttcgtctaggactggtgca |
10231041 |
T |
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| Q |
219 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10231042 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtc |
10231115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 10239622 - 10239895
Alignment:
| Q |
19 |
aacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgg |
118 |
Q |
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|||||||||| ||||| ||||||||||||| |||| ||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |
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| T |
10239622 |
aacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagg |
10239721 |
T |
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| Q |
119 |
gtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgca |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || |||||||||||||||||||||||||||||||||||| |
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| T |
10239722 |
gtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgca |
10239821 |
T |
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| Q |
219 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239822 |
aagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10239895 |
T |
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