View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16404_high_3 (Length: 405)
Name: NF16404_high_3
Description: NF16404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16404_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 19201851 - 19202214
Alignment:
| Q |
19 |
ctattaaacctaataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacac |
118 |
Q |
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| T |
19201851 |
ctattaaacctaataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacac |
19201950 |
T |
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| Q |
119 |
tttcaacgtctcatacctgagaatatttttcattaatatataaactgaatgtaatgcttgattcaagagatgatattatttattctagttctgtttgaga |
218 |
Q |
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| T |
19201951 |
tttcaacttctcatacctgagaatgtttttcattaatatataaactgaacgtaatgcttgattcaagagatgatattatttattctagttctgtttgaga |
19202050 |
T |
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| Q |
219 |
ctgttttctttgttacagattcaatgtaatcctacttccaagtacctttgtttgatcttgtcgagctcagttctctcccattcatcatctgcatctgtct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
19202051 |
ctgttttctttgttacagattcaatgtaatcctacttccaagtacctttgtttgatcttctcgagctcagttctctcccattcatcatctgcatttgtct |
19202150 |
T |
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| Q |
319 |
ccccattgtttgatcctgttgtagtctgtcttagagggccaggtttctctgaagtcttcctaat |
382 |
Q |
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| T |
19202151 |
ccccattgtttgatcctgttgtagtctgtcttagagggccaggtttctctgaagtcttcctaat |
19202214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 19197867 - 19198144
Alignment:
| Q |
19 |
ctattaaacctaataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacac |
118 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||| | |
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| T |
19197867 |
ctatgaaacctaataaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactc |
19197966 |
T |
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| Q |
119 |
tttcaacgtctcatacctgagaatatttttcattaatatataaactgaatgtaatgcttgattcaagagatgatattatttattctagttctgtttgaga |
218 |
Q |
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||| || |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
19197967 |
tttagacttctcatacctgacaatatttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgaga |
19198066 |
T |
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| Q |
219 |
ctgttttctttgttacagattcaatgtaatcctacttccaagtacctttgtttgatcttgtcgagctcagttctctcc |
296 |
Q |
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| T |
19198067 |
gtgttttctttgttagaaattcaatgtaatcctgcttccaagtacctttggttgatcttgtcgggctcagttctctcc |
19198144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 19198162 - 19198255
Alignment:
| Q |
269 |
tttgatcttgtcgagctcagttctctcccattcatcatctgcatctgtctccccattgtttgatcctgttgtagtctgtcttagagggccaggtttc |
365 |
Q |
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|||||||||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
19198162 |
tttgatcttgtcgatcacagttttctcccatacatc---tgcacttgtctccccattgtttgatcctgttgtagtctctctttgagggtcaggtttc |
19198255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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