View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16404_low_1 (Length: 466)
Name: NF16404_low_1
Description: NF16404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16404_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 2289796 - 2289355
Alignment:
| Q |
19 |
gaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgtttctgaaaaacccaaagaggaagcaccagttgaattgg |
118 |
Q |
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| T |
2289796 |
gaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgttgctgaaaaacccaaagaggaagcaccagttgaattgg |
2289697 |
T |
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| Q |
119 |
agaaagaaaatggtacagctgatagcagttataagcaagagaaatccggcgcagaggaaagcgaaggtgctgagaaagtgagt---aatgttgaagatat |
215 |
Q |
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| T |
2289696 |
agaaagaaaatggtacagctgatagcagttataagcaagagaaatccggcgcagaggaaagcgaaggtgctgagaaagtgagtctcaatgttgaagatat |
2289597 |
T |
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| Q |
216 |
tattcatggtaagaatgaaatttcagcaagtgatgaatagcaaacaattcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttgg |
315 |
Q |
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| T |
2289596 |
tattaatggtaagaatgaaatttcagcaagtgatgaatagcaaacagttcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttgg |
2289497 |
T |
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| Q |
316 |
agctttgctcaatgaagtagcttagtatcactagttaatacttggtgcttc-----nnnnnnnnngcaaagcttggtagttaggttcttatatgcacttt |
410 |
Q |
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| T |
2289496 |
agctttgctcaatgaagtagcttagtatcactagttaatacttagtgcttctttttttttttgttgcaaagcttggtagtaagctttttatatgcacttt |
2289397 |
T |
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| Q |
411 |
atcaatacttagtgcccttaacttttttgtggtgctgctatt |
452 |
Q |
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| T |
2289396 |
atcaatactttgtgcccttaacttttttgtggtgctgctatt |
2289355 |
T |
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