View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16404_low_10 (Length: 272)
Name: NF16404_low_10
Description: NF16404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16404_low_10 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 29505542 - 29505743
Alignment:
| Q |
21 |
tatattatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgtagaaaacgtttagttacacatatatcaacagt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29505542 |
tatattatgagattgatactgtctttgatgacagattattgaacattgagaaatgcaatacaaattgtagaaaatgtttagttacacatatatcaacagt |
29505641 |
T |
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| Q |
121 |
cacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcatgattcagttaaaccataaaagtgaaagtaacaaattagg |
220 |
Q |
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||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
29505642 |
cacatggttaacgaattacagcagttaataaagcaactatcccattgctaaaagttttcatgattcagttaaaccataaaagtgaaactaactaagtagg |
29505741 |
T |
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| Q |
221 |
aa |
222 |
Q |
| |
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|| |
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| T |
29505742 |
aa |
29505743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 44614692 - 44614594
Alignment:
| Q |
20 |
atatattatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgtagaaaacgtttagttacacatatatcaaca |
118 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
44614692 |
atatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaaca |
44614594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 44793877 - 44793975
Alignment:
| Q |
20 |
atatattatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgtagaaaacgtttagttacacatatatcaaca |
118 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
44793877 |
atatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaaca |
44793975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 44783806 - 44783884
Alignment:
| Q |
124 |
atggttaatgaatttcagcagttaataaagcaaccatccc-aaggctaaaagttttcatgattcagttaaaccataaaa |
201 |
Q |
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||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||||| |
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| T |
44783806 |
atggtaaatgaatttcagtagttaataaagcaactatcccaaaggctaaaagtatttatgattcagttaaaccataaaa |
44783884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 11542496 - 11542559
Alignment:
| Q |
25 |
ttatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgt |
88 |
Q |
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||||| |||||||| |||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
11542496 |
ttatgggattgatattgtctttgatgacatgttattgatcactgagaaatgcaatacaaattgt |
11542559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 11542609 - 11542671
Alignment:
| Q |
119 |
gtcacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcat |
181 |
Q |
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|||| ||| |||||||||||| | ||||||| ||||||| || |||||||||||||| ||||| |
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| T |
11542609 |
gtcatatgattaatgaatttcggtagttaattaagcaactataccaaggctaaaagtcttcat |
11542671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 27169 - 27269
Alignment:
| Q |
20 |
atatattatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgtagaaaacgtttagttacacatatatcaacag |
119 |
Q |
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||||||||| ||||||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
27169 |
atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag |
27268 |
T |
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| Q |
120 |
t |
120 |
Q |
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|
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| T |
27269 |
t |
27269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 171623 - 171523
Alignment:
| Q |
20 |
atatattatgagattgatactgtctttgatgacagattattgaacagtgagaaatgcaatacaaattgtagaaaacgtttagttacacatatatcaacag |
119 |
Q |
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||||||||| ||||||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
171623 |
atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag |
171524 |
T |
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| Q |
120 |
t |
120 |
Q |
| |
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| |
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|
| T |
171523 |
t |
171523 |
T |
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