View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16404_low_11 (Length: 251)

Name: NF16404_low_11
Description: NF16404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16404_low_11
NF16404_low_11
[»] chr8 (6 HSPs)
chr8 (1-243)||(3701402-3701643)
chr8 (1-243)||(3708169-3708411)
chr8 (58-243)||(3769842-3770026)
chr8 (1-243)||(3719678-3719919)
chr8 (157-241)||(3777610-3777694)
chr8 (156-221)||(33004851-33004916)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3701643 - 3701402
Alignment:
Q  1 tagacactaaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattga 100  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701643 tagacaccaaaactttcaca-gatttctatttgacaaatacatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattga 3701545  T
Q  101 aatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701544 aatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatct 3701445  T
Q  201 ttaagctcttcaattctttgtcgaatctcacttcgttcttctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3701444 ttaagctcttcaattctttgtcgaatctcacttcgttcttctc 3701402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3708411 - 3708169
Alignment:
Q  1 tagacactaaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattga 100  Q
    ||||||| |||||| ||||| |||||||||| |||||||| |||||||||| |||||||||||||||||| ||||| ||| ||||||||  |||||||||    
T  3708411 tagacaccaaaactctcacatgatttctattcgacaaatacatattccctcgattcttttcttctttgcacagctttccctataaaacgttgataattga 3708312  T
Q  101 aatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatct 200  Q
    |||||||||||| |||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3708311 aatttccatttataacgaaaagtttgctactcgagtaccgaattcacaaagtgctcttgtagaggacccatcttctgctaatgcacaagctgcatcatct 3708212  T
Q  201 ttaagctcttcaattctttgtcgaatctcacttcgttcttctc 243  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  3708211 ttaagctcttcaattctttgtcgaatctcactccgttcttctc 3708169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 3769842 - 3770026
Alignment:
Q  58 tttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctct 157  Q
    ||||||||||||||||||| |||  |||||||   |||| ||||||||||| ||| || |||||||||||||| |||||||| ||||||||||| |||||    
T  3769842 tttcttctttgcatagctttcccg-taaaacgtaaataaatgaaatttccaattataaggaaaagttttccacacgagtaccaaattcaaaaagtgctct 3769940  T
Q  158 tgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcgttcttctc 243  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  3769941 tgtaaaggacccatctcctgctaatgcacaagctgcttcatcttttagctcttcaattctttgtcgaatctcactccgttcttctc 3770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3719919 - 3719678
Alignment:
Q  1 tagacactaaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaac-gacgataattg 99  Q
    |||||||||||||| |||||  ||||||||| ||||| || | |||||| |||||| |||||||  ||||||||||  ||  |||||  | | |||| |     
T  3719919 tagacactaaaactctcaca--atttctattcgacaattacacattcccactattcatttcttcactgcatagcttttcctgtaaaaatgtcaataaatt 3719822  T
Q  100 aaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatc 199  Q
    |||||||| |||| ||| | |||||| | | | |||| || |||||| |||  || |||||||||||||||||||||||||||||||||||||||||||     
T  3719821 aaatttccttttataacaacaagtttcctatttgagttccaaattcagaaaatgcccttgtagaggacccatcttctgctaatgcacaagctgcatcatt 3719722  T
Q  200 tttaagctcttcaattctttgtcgaatctcacttcgttcttctc 243  Q
    |||||||||||| |||||||||||||||||||| |||| |||||    
T  3719721 tttaagctcttccattctttgtcgaatctcactccgtttttctc 3719678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 3777610 - 3777694
Alignment:
Q  157 ttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcgttcttc 241  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  3777610 ttgtagaggacccatcttctgctaatgcaccagcagcaacatctttaagatcttcaattctttgtcgaatctcacttcgttcttc 3777694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 33004851 - 33004916
Alignment:
Q  156 cttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgt 221  Q
    ||||| || |||||||||||||||||||||||||  | | ||| ||||||||||||||||||||||    
T  33004851 cttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgt 33004916  T

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