View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16405_low_1 (Length: 530)

Name: NF16405_low_1
Description: NF16405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16405_low_1
NF16405_low_1
[»] chr8 (7 HSPs)
chr8 (15-509)||(23392453-23392947)
chr8 (15-513)||(23285618-23286119)
chr8 (15-172)||(23341775-23341932)
chr8 (15-172)||(23385202-23385359)
chr8 (248-346)||(23342017-23342115)
chr8 (248-346)||(23385019-23385117)
chr8 (50-142)||(21180570-21180662)
[»] chr6 (2 HSPs)
chr6 (50-136)||(3979400-3979486)
chr6 (57-127)||(25810289-25810359)
[»] chr2 (1 HSPs)
chr2 (57-136)||(34328518-34328597)
[»] chr3 (13 HSPs)
chr3 (57-136)||(5849826-5849905)
chr3 (57-136)||(20342780-20342859)
chr3 (57-127)||(5445453-5445523)
chr3 (57-127)||(5454036-5454106)
chr3 (48-121)||(1050102-1050175)
chr3 (261-303)||(1076815-1076857)
chr3 (261-303)||(1300163-1300205)
chr3 (57-127)||(5502078-5502148)
chr3 (48-121)||(1077019-1077092)
chr3 (48-121)||(1090825-1090898)
chr3 (48-121)||(1107220-1107293)
chr3 (48-121)||(1299928-1300001)
chr3 (60-136)||(5803399-5803475)
[»] chr1 (1 HSPs)
chr1 (84-129)||(21936036-21936081)
[»] chr4 (1 HSPs)
chr4 (70-124)||(36438139-36438193)


Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Complemental strand, 23392947 - 23392453
Alignment:
Q  15 atgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcat 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23392947 atgtattcatatatcaataacatttcctctttatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcat 23392848  T
Q  115 ttttaaactcctccaatccttgatctgacacctttgagtgccgttttatggctacctccttcccgtctacgagtgttccctgcatattataatttaggac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  23392847 ttttaaactcctccaatccttgatctgacacctttgagtgccgttttatggctacctccttcccgtctacgagtcttccctgcatattataatttacgac 23392748  T
Q  215 aataatttattgaaaaaggtaaaggtctccattgaatatggctatattaccttatacactggtccaaatccaccttccccaagtttattgctgctagaaa 314  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  23392747 aataatttattgaaaaaggttaaggtcttcattgaatatggctatattaccttatacactggtccaaatccaccttccccaagtttacttgtgctagaaa 23392648  T
Q  315 agttattagtggctttaacaaggattgaaaaatcaaatatcggtagacccatatcttcctttatcaatctagaatatacttgccgtttctgaaatggtgc 414  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  23392647 agttattagtggctttaacaaggattgaaaaagcaaatatcggtagatccatgtcttcctttattaatctagaatatacttgccgtttctgaaatggtgc 23392548  T
Q  415 aagacgatatagccttcgtgcctctgaaatgtgcaacatgacaacatcaagaaattagttactacaacaaacaagtttaggctttagaatgtaaa 509  Q
    | ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  23392547 acgacgatataaccttggtgccactgaaatgtgcaacatgacaacatcaagaaattcattactacaacaaacaagtttaggcttttgaatgtaaa 23392453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 513
Target Start/End: Original strand, 23285618 - 23286119
Alignment:
Q  15 atgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23285618 atgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagttttgcaatcaacacaacttcat 23285717  T
Q  115 ttttaaactcctccaatccttgatctgacacctttgagtgccgttttatggctacctccttcccgtctacgagtgttccctgcatattataatttagga- 213  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||     
T  23285718 ttttaaactcctccaatccttgatctgacacctttgagtgtcgttttatggctacctccttcccgtctacgagtgttccctgaatactataatttaggat 23285817  T
Q  214 --caataatttattgaaaaaggtaaaggtctccattgaatatggctatattaccttatacactggtccaaatccaccttccccaagtttattgctgctag 311  Q
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  23285818 aacaaaaatttattgaaaaaggtaaaggtcttcattgaatatggctatattaccttatacactggtccaaatccaccttccccaagtttatttgtgctag 23285917  T
Q  312 aaaagttattagtggctttaacaaggattgaaaaatcaaatatcggtagacccatatcttcctttatcaatctagaatatacttgccgtttctgaaatgg 411  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  23285918 agaagttataagtggctttaacaaggattgaaaaatcaaatatcggtagatccatgtcttcctttatcaatctcgaatatacttgccttttctgaaatgg 23286017  T
Q  412 tgcaagacgatatagccttcgtgcctctgaaatgtgcaacatgacaacatcaagaaattagttactacaacaaacaagtttaggctttagaatgtaaatt 511  Q
    |||| ||||||||| |||| ||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  23286018 tgcacgacgatataaccttggtgccactgaaatgtgcaacataacaacatcaagtatttagttactacaacaaacaagtttaggctttagaatgtaaatt 23286117  T
Q  512 ta 513  Q
    ||    
T  23286118 ta 23286119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 23341775 - 23341932
Alignment:
Q  15 atgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcat 114  Q
    ||||||||||| ||||| ||  |||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || |||||||||| ||||||||    
T  23341775 atgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaacttcat 23341874  T
Q  115 ttttaaactcctccaatccttgatctgacacctttgagtgccgttttatggctacctc 172  Q
    ||||||| |||||||| |||||||| ||||  ||||||| ||||||||||||||||||    
T  23341875 ttttaaattcctccaacccttgatcagacatttttgagttccgttttatggctacctc 23341932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 23385359 - 23385202
Alignment:
Q  15 atgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcat 114  Q
    ||||||||||| ||||| ||  |||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || |||||||||| ||||||||    
T  23385359 atgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaagctttgcaatcaacaaaacttcat 23385260  T
Q  115 ttttaaactcctccaatccttgatctgacacctttgagtgccgttttatggctacctc 172  Q
    ||||||| |||||||| |||||||| ||||  ||||||| ||||||||||||||||||    
T  23385259 ttttaaattcctccaacccttgatcagacatttttgagttccgttttatggctacctc 23385202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 23342017 - 23342115
Alignment:
Q  248 gaatatggctatattaccttatacactggtccaaatccaccttccccaagtttattgctgctagaaaagttattagtggctttaacaaggattgaaaaa 346  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||   || |||||||||| ||||| ||||    
T  23342017 gaataaggcaatattaccttataaactggtccaaatccaccttccccaagtttatttctgctagaaaaattaccggttgctttaacaatgattggaaaa 23342115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 23385117 - 23385019
Alignment:
Q  248 gaatatggctatattaccttatacactggtccaaatccaccttccccaagtttattgctgctagaaaagttattagtggctttaacaaggattgaaaaa 346  Q
    ||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||  ||| |||||||||| ||||| ||||    
T  23385117 gaataaggcaatattaccttataaaccggtccaaatccaccttccccaagtttatttctgctagaaaaattaccagttgctttaacaatgattggaaaa 23385019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 21180570 - 21180662
Alignment:
Q  50 aatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttgatctga 142  Q
    ||||||||| || |||||  | |||||||||  |||||| ||||||||||||||||   ||||||||   ||||||||| |||||||| ||||    
T  21180570 aatgcagcagccgagaagtctaacaagattattgtgttggagtttcgcaatcaacaatgcttcatttcgcaactcctcccatccttgacctga 21180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 3979400 - 3979486
Alignment:
Q  50 aatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg 136  Q
    ||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| |  |||||||||| || |||| ||| |||||    
T  3979400 aatgcagcatccaagaagtttgacaagattacggtgttgaagtttggcaatcaacgccgcttcatttttgaattcctgcaacccttg 3979486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 25810359 - 25810289
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 127  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| ||||||||    
T  25810359 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 25810289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 34328597 - 34328518
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg 136  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    ||||| |||||||| || | |||||||||    
T  34328597 caaccaagaagctttacaagatttcggtgttgaagtttcgcaatcaattttacttcgtttttaaattcattcaatccttg 34328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 5849905 - 5849826
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg 136  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| |||||||| | ||||||    
T  5849905 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactccttg 5849826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 20342780 - 20342859
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg 136  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| |||||||| | ||||||    
T  20342780 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttg 20342859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 5445453 - 5445523
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 127  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| ||||||||    
T  5445453 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 5445523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 5454036 - 5454106
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 127  Q
    ||||||||||| || ||||||||||||||||||||| | || ||||||   ||||||||||| ||||||||    
T  5454036 caaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctc 5454106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 1050175 - 1050102
Alignment:
Q  48 tgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaa 121  Q
    |||||||| |||||||||| ||| |||||||| |||||||||||||| |||   || | |||||||||||||||    
T  1050175 tgaatgcaacaaccaagaaccttaacaagatttcggtgttgaagttttgcacataatataacttcatttttaaa 1050102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 1076857 - 1076815
Alignment:
Q  261 ttaccttatacactggtccaaatccaccttccccaagtttatt 303  Q
    |||||||||| ||||||||||| |||||||| |||||||||||    
T  1076857 ttaccttatatactggtccaaagccaccttctccaagtttatt 1076815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 1300163 - 1300205
Alignment:
Q  261 ttaccttatacactggtccaaatccaccttccccaagtttatt 303  Q
    |||||||||| ||||||||||| |||||||| |||||||||||    
T  1300163 ttaccttatatactggtccaaagccaccttctccaagtttatt 1300205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 5502078 - 5502148
Alignment:
Q  57 caaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 127  Q
    ||||||||||| || ||||||||||||||||||||| | || |||||    ||||||||||| ||||||||    
T  5502078 caaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctc 5502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 1077092 - 1077019
Alignment:
Q  48 tgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaa 121  Q
    |||||||| |||||||||| ||| |||||||| || ||||||||||| |||   || | |||||||||||||||    
T  1077092 tgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaa 1077019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 1090898 - 1090825
Alignment:
Q  48 tgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaa 121  Q
    |||||||| |||||||||| ||| |||||||| || ||||||||||| |||   || | |||||||||||||||    
T  1090898 tgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaa 1090825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 1107293 - 1107220
Alignment:
Q  48 tgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaa 121  Q
    ||||| || |||||||||| ||| |||||||| |||||||||||||||| |   || | |||||||||||||||    
T  1107293 tgaatacaacaaccaagaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaa 1107220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 1299928 - 1300001
Alignment:
Q  48 tgaatgcagcaaccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaa 121  Q
    |||||||| |||||||||| ||| |||||||| || ||||||||||| |||   || | |||||||||||||||    
T  1299928 tgaatgcaacaaccaagaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaa 1300001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 5803475 - 5803399
Alignment:
Q  60 ccaagaagcttcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg 136  Q
    |||||||| || || |||||||||||||||||| | || ||||||   ||||||||||| ||||||||  |||||||    
T  5803475 ccaagaagttttactagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcggatccttg 5803399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 21936081 - 21936036
Alignment:
Q  84 tgttgaagtttcgcaatcaacacaacttcatttttaaactcctcca 129  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||||    
T  21936081 tgttgaagtttcgcgatcaaaacaacttcattcttaaactcctcca 21936036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 36438139 - 36438193
Alignment:
Q  70 tcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactc 124  Q
    |||||||||| | |||||||||||| | |||||| ||||| ||||||||||||||    
T  36438139 tcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactc 36438193  T

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