View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16405_low_2 (Length: 451)

Name: NF16405_low_2
Description: NF16405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16405_low_2
NF16405_low_2
[»] chr4 (4 HSPs)
chr4 (1-432)||(9047455-9047886)
chr4 (288-430)||(43096160-43096302)
chr4 (240-432)||(11673524-11673716)
chr4 (389-432)||(55468934-55468977)
[»] chr2 (8 HSPs)
chr2 (172-426)||(22564540-22564794)
chr2 (143-430)||(24185541-24185828)
chr2 (234-418)||(10194067-10194251)
chr2 (381-432)||(22379368-22379419)
chr2 (381-432)||(27608070-27608121)
chr2 (386-432)||(3192084-3192130)
chr2 (381-430)||(34427071-34427120)
chr2 (262-322)||(27607951-27608011)
[»] chr5 (2 HSPs)
chr5 (244-405)||(21747395-21747556)
chr5 (181-247)||(38622720-38622786)
[»] chr7 (2 HSPs)
chr7 (143-430)||(10012623-10012910)
chr7 (168-247)||(13043062-13043141)
[»] scaffold0126 (2 HSPs)
scaffold0126 (143-430)||(43737-44024)
scaffold0126 (143-328)||(38762-38947)
[»] scaffold0664 (1 HSPs)
scaffold0664 (170-430)||(1950-2210)
[»] chr3 (5 HSPs)
chr3 (143-430)||(14960141-14960427)
chr3 (288-430)||(22721173-22721315)
chr3 (380-430)||(27537919-27537969)
chr3 (382-427)||(9701512-9701557)
chr3 (389-432)||(7578623-7578666)
[»] chr1 (5 HSPs)
chr1 (143-430)||(19280627-19280914)
chr1 (288-430)||(45992312-45992454)
chr1 (387-432)||(48920966-48921011)
chr1 (396-432)||(22634787-22634823)
chr1 (381-432)||(34428453-34428504)
[»] chr8 (2 HSPs)
chr8 (363-432)||(19195977-19196046)
chr8 (389-432)||(28184416-28184459)
[»] scaffold0301 (2 HSPs)
scaffold0301 (381-432)||(4930-4981)
scaffold0301 (262-315)||(5047-5100)
[»] scaffold1544 (1 HSPs)
scaffold1544 (380-430)||(1233-1283)
[»] scaffold0292 (1 HSPs)
scaffold0292 (396-432)||(21621-21657)
[»] scaffold0128 (1 HSPs)
scaffold0128 (396-432)||(23431-23467)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 9047886 - 9047455
Alignment:
Q  1 acccttgcaaagtttctgcaggaggtaattttcgtaattctgagagtatatgtatgtgatgcttttttcagttcttaggtcctcaaaatgctctctatgc 100  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9047886 acccttgcaaagcttctgcaggaggtatttttcgtaattctgagagtatatgtatgggatgcttttttcagttcttaggtcctcaaaatgctctctatgc 9047787  T
Q  101 tgaattggtagatgctatgattgcaattgagattgcatacaacaaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttc 200  Q
    ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  9047786 tgagttggtagctgctatgattacaattgagattgcatacaacaaaggttttctgaatctctggcttgaatcaaactcccaactggttattctggctttc 9047687  T
Q  201 aaatcaaacactgtggttccttggggattacgaaatagatggaaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagag 300  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9047686 aaatcaaacactgtggttccttggggattaagaaatagatggcaaaattgcatggctagattgagaaatatgaggtttgtggtgtctcacaattatagag 9047587  T
Q  301 aagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggaga 400  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9047586 aagggaatgcttgtgctgacagccttgcgaatcttggtctctctatgtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggaga 9047487  T
Q  401 gtacactaggaataggttgggaatgcccaact 432  Q
    ||||||||||||||||||| ||||||||||||    
T  9047486 gtacactaggaataggttgagaatgcccaact 9047455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 43096302 - 43096160
Alignment:
Q  288 cacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggtcagattatactcctgatt 387  Q
    ||||| |||||||||||||||||||||| ||| |||||||| || || ||| |||||    |||||| |||  | ||||||||||||  ||  |||||||    
T  43096302 cacatatatagagaagggaatgcttgtgctgatagccttgcaaacctaggtctctctttcacttcttttgatttattttggtcagatattatccctgatt 43096203  T
Q  388 tcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||||||| ||||||||||  || ||||||||||| ||||||||    
T  43096202 tcattaggggagagtacatcagaaataggttgggtatgcccaa 43096160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 432
Target Start/End: Complemental strand, 11673716 - 11673524
Alignment:
Q  240 tggaaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggta 339  Q
    |||||||| || ||||||||||| |||| ||||   ||||||||||| || ||||| || ||||| |||  |||||  ||  ||||||| ||| |||||     
T  11673716 tggaaaaattgtatggctagattaagaagtatgcgttttgtggtgtcccatatttacagggaaggcaatagttgtgcggatggccttgctaatattggtc 11673617  T
Q  340 tctctaa-gtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    | || || |||||||| |||  | |||||||| ||||  | |||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  11673616 t-tcaaatgtcttcttttgatttattttggtctgatttcattcctgaatccattagaggagagtacactagaaataggttgggaatgcccaact 11673524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 55468934 - 55468977
Alignment:
Q  389 cattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  55468934 cattagaggagagtacaataggaatagattgggtatgcccaact 55468977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 172 - 426
Target Start/End: Original strand, 22564540 - 22564794
Alignment:
Q  172 cagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaactgcatggctagattgagaaatat 271  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||    
T  22564540 cagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaactgcatggctagattgagaagtat 22564639  T
Q  272 gaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggtca 371  Q
    || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  22564640 gaggtttgtggtgtctcacatttatagagaagggaatgtttgtgctgacagccttgcgaatcttggtctctctatgtcttcttctgaggtgttttggtca 22564739  T
Q  372 gattatactcctgatttcattagaggagagtacactaggaataggttgggaatgc 426  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22564740 gattttactcctgatttcattagtggagagtacactaggaataggttgggaatgc 22564794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 24185828 - 24185541
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | |||||||||| | |  |  |||| ||||||    
T  24185828 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttagtgcctcagaaacagatgg 24185729  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatct 342  Q
    ||||||||  |   |||| | ||||||||||  ||||||||||| ||||| ||||| |||||||||| ||||| ||| |||||||| ||  | ||  |||    
T  24185728 aaaaactgtttatttagacttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgtttgtgctgatagccttgcaaacatgggcctct 24185629  T
Q  343 ctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||   ||||||| |||  | ||||||||||||  ||  |||||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  24185628 ctttctcttcttttgatttattttggtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaa 24185541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 418
Target Start/End: Complemental strand, 10194251 - 10194067
Alignment:
Q  234 aatagatggaaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatc 333  Q
    ||||||||| | ||||| |||| |||| | ||| |||||| |||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||| || |    
T  10194251 aatagatggtataactgtatggttagacttagagatatgaggtttgttgtgtctcacatttatagagaaggtaatgcatgtgctgatagtcttgcaaacc 10194152  T
Q  334 ttggtatctctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggtt 418  Q
    | | | | |||  ||| |||| |||| | |||||||| |||  ||  |||||||||||||| |||||||||| ||||||||||||    
T  10194151 tagatctttctttgtcatcttttgagttattttggtctgatactatccctgatttcattaggggagagtacaataggaataggtt 10194067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 22379419 - 22379368
Alignment:
Q  381 cctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22379419 cctgatttcattaggggagagtacactaggaataggttgggaatgcccaact 22379368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 27608070 - 27608121
Alignment:
Q  381 cctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  27608070 cctgatttcattaggggagagtacactaggaataggctgggaatgcccaact 27608121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 3192084 - 3192130
Alignment:
Q  386 tttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  3192084 tttcattagaggagagtacactacgaatatgttgggaatacccaact 3192130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 34427120 - 34427071
Alignment:
Q  381 cctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    |||||||||||||  |||||||||| |||||||||||||||||| |||||    
T  34427120 cctgatttcattaagggagagtacaataggaataggttgggaatacccaa 34427071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 27607951 - 27608011
Alignment:
Q  262 tgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacag 322  Q
    ||||||| ||||  || |||||||||||||| ||||| ||||| |||||||||| ||||||    
T  27607951 tgagaaacatgagattagtggtgtctcacatatatagggaaggcaatgcttgtgctgacag 27608011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 244 - 405
Target Start/End: Original strand, 21747395 - 21747556
Alignment:
Q  244 aaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctc 343  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  21747395 aaaactgcatggctagattgagaaatatgaggtttgtggtgtctcacatttatagagaagggaatgcttgtgctgacagccttgcgaatcttggtctctc 21747494  T
Q  344 taagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtaca 405  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21747495 tatgtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtaca 21747556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 38622720 - 38622786
Alignment:
Q  181 aactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaa 247  Q
    ||||||| |||||||||||||| ||||   |||||||||||||||||||| ||||||| ||| ||||    
T  38622720 aactggtgattatggctttcaattcaatttctgtggttccttggggattaagaaataggtgggaaaa 38622786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 430
Target Start/End: Original strand, 10012623 - 10012910
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | |||||||||| | |  |  |||| ||||||    
T  10012623 caaaggttttcaaaatgtatggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttagtgcctcagaaacagatgg 10012722  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatct 342  Q
    ||||||||  |   |||| | ||||||||||  ||||||||||| ||||| ||||| |||||||||||||||| ||| |||||||| || || ||  |||    
T  10012723 aaaaactgtttatttagacttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctct 10012822  T
Q  343 ctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    || | ||||||| |||  | ||||||||||||  ||  |||||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  10012823 cttactcttcttttgatttattttggtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaa 10012910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 13043062 - 13043141
Alignment:
Q  168 gaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaa 247  Q
    |||||||||||  ||||||| |||||||||||||| || |   |||||||||||||||| ||| ||||||| ||| ||||    
T  13043062 gaatcagactctcaactggtgattatggctttcaattcgatttctgtggttccttggggtttaagaaataggtgggaaaa 13043141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 143 - 430
Target Start/End: Original strand, 43737 - 44024
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | |||||||||| | |  |  |||| ||||||    
T  43737 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttagtgcctcagaaacagatgg 43836  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatct 342  Q
    ||||||||  |   |||| | ||||||||||  ||||||||||| ||||| ||||| |||||||||||||||| ||| |||||||| || || ||  |||    
T  43837 aaaaactgtttatttagacttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctct 43936  T
Q  343 ctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||   ||||||| |||  | ||||||||||||  ||  |||||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  43937 ctttctcttcttttgatttattttggtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaa 44024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 38762 - 38947
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | |||||||||||| |  |  |||| ||||||    
T  38762 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatgg 38861  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgc 328  Q
     |||||||  |   |||| | ||||||||||  ||||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||    
T  38862 caaaactgtttatttagacttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgc 38947  T

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Target: scaffold0664 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 1950 - 2210
Alignment:
Q  170 atcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaactgcatggctagattgagaaat 269  Q
    |||||||||| || | |||||| |||||||||| |||||  | |||||||||||| |  |  |||| |||||| |||||||  |   |||| | ||||||    
T  1950 atcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatggcaaaactgtttatttagacttagaaat 2049  T
Q  270 atgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggt 369  Q
    ||||  ||||||||||| ||||| ||||| |||||||||||||||| ||| |||||||| ||  | ||  ||||| | ||||||| |||  | |||||||    
T  2050 atgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacatgggcctctcttactcttcttttgatttattttggt 2149  T
Q  370 cagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    |||||  ||  |||||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  2150 cagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaa 2210  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 143 - 430
Target Start/End: Original strand, 14960141 - 14960427
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | |||||||||||| |  |  |||| ||||||    
T  14960141 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttggtgcctcagaaacagatgg 14960240  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatct 342  Q
     |||||||  |   |||| |  |||||||||  ||| ||||||| ||||| ||||| |||||||||||||||| ||| |||||||| || || ||  |||    
T  14960241 caaaactgtttatttagacttcgaaatatgagatttatggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctct 14960340  T
Q  343 ctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||   ||||||| |||  | ||||||||||| |||  ||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  14960341 ctttctcttcttttgatttattttggtcaga-tattatccagattttattaggggagagtacattaggaataggttgggtatgcccaa 14960427  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 22721315 - 22721173
Alignment:
Q  288 cacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggtcagattatactcctgatt 387  Q
    ||||| |||||||||||||||||||||| ||| |||||||| ||||| ||| |||||    |||||| |||  | ||||||||||||  ||  |||||||    
T  22721315 cacatatatagagaagggaatgcttgtgctgatagccttgcaaatctaggtctctctttcacttcttttgatttattttggtcagatattatccctgatt 22721216  T
Q  388 tcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    |||| || ||||||||||  |||||||||||||| ||||||||    
T  22721215 tcataaggggagagtacatcaggaataggttgggtatgcccaa 22721173  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 27537919 - 27537969
Alignment:
Q  380 tcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    |||||| |||||||||||||||||||||| ||||||||||||  |||||||    
T  27537919 tcctgaattcattagaggagagtacactaagaataggttgggcttgcccaa 27537969  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 9701512 - 9701557
Alignment:
Q  382 ctgatttcattagaggagagtacactaggaataggttgggaatgcc 427  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||    
T  9701512 ctgacttcattagaggagagtacaataggaataggttgggtatgcc 9701557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 7578623 - 7578666
Alignment:
Q  389 cattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  7578623 cattagaggagagtgcaataggaataggttgggtatgcccaact 7578666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 143 - 430
Target Start/End: Complemental strand, 19280914 - 19280627
Alignment:
Q  143 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatgg 242  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||| | |||||||||| |||||  | |||||||||||| |  |  |||| ||||||    
T  19280914 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttaatttggctttcaagtcaaattcagtggttccttggtgtctcagaaacagatgg 19280815  T
Q  243 aaaaactgcatggctagattgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatct 342  Q
     |||||||  |   |||| | ||||||||||  ||||||||||| ||||| ||||| |||| ||||||||||| ||| |||||||| || |||| | |||    
T  19280814 caaaactgtttatttagacttagaaatatgagatttgtggtgtcacacatatatagggaagagaatgcttgtgctgatagccttgcaaaccttgatctct 19280715  T
Q  343 ctaagtcttcttctgaggtgttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||    |||||| |||  | ||||||||||||  ||  |||||||| ||||| |||||||||| |||||||| |||||| ||||||||    
T  19280714 ctttcacttcttttgatttattttggtcagatactatccctgattttattaggggagagtacattaggaatatgttgggtatgcccaa 19280627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 430
Target Start/End: Original strand, 45992312 - 45992454
Alignment:
Q  288 cacatttatagagaagggaatgcttgtgttgacagccttgcgaatcttggtatctctaagtcttcttctgaggtgttttggtcagattatactcctgatt 387  Q
    ||||| |||||||||||||||||||||| ||| |||||||| || || ||| |||||    ||||||   |  | ||||||||||||  ||  |||||||    
T  45992312 cacatatatagagaagggaatgcttgtgctgatagccttgcaaacctaggtctctctttcacttctttaaatttattttggtcagatattatccctgatt 45992411  T
Q  388 tcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    ||||||| ||||||||||  ||||||| |||||| ||||||||    
T  45992412 tcattaggggagagtacatcaggaataagttgggtatgcccaa 45992454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 48920966 - 48921011
Alignment:
Q  387 ttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||    
T  48920966 ttcattagaggagagtacaataggaacaggttgggtatgcccaact 48921011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 22634787 - 22634823
Alignment:
Q  396 ggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22634787 ggagagtacattaggaataggttgggaatgcccaact 22634823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 34428453 - 34428504
Alignment:
Q  381 cctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    ||||||| ||||||||||||||||| |||||| |||||||| ||| ||||||    
T  34428453 cctgattccattagaggagagtacaataggaacaggttgggtatgtccaact 34428504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 19196046 - 19195977
Alignment:
Q  363 ttttggtcagattatactcctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||| |||  || |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19196046 ttttggtctgatgttattcctgatttcattagaggagagtacactaggaataggttgggtatgcccaact 19195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 28184459 - 28184416
Alignment:
Q  389 cattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  28184459 cattagaggagagtacaataggaataggttgggtatgcccaact 28184416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 4981 - 4930
Alignment:
Q  381 cctgatttcattagaggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  4981 cctgatttcattaggggagagtacactaggaataggctgggaatgcctaact 4930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 5100 - 5047
Alignment:
Q  262 tgagaaatatgaagtttgtggtgtctcacatttatagagaagggaatgcttgtg 315  Q
    ||||||| ||||  ||||||||||||||||| ||||| ||||| ||||||||||    
T  5100 tgagaaacatgagatttgtggtgtctcacatatatagggaaggcaatgcttgtg 5047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1544 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1544
Description:

Target: scaffold1544; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 1233 - 1283
Alignment:
Q  380 tcctgatttcattagaggagagtacactaggaataggttgggaatgcccaa 430  Q
    |||||| |||||||||||||||||||||| ||||||||||||  |||||||    
T  1233 tcctgaattcattagaggagagtacactaagaataggttgggcttgcccaa 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 21657 - 21621
Alignment:
Q  396 ggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21657 ggagagtacattaggaataggttgggaatgcccaact 21621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 23467 - 23431
Alignment:
Q  396 ggagagtacactaggaataggttgggaatgcccaact 432  Q
    |||||||||| |||||||||||||||||| |||||||    
T  23467 ggagagtacattaggaataggttgggaatacccaact 23431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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