View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16406_high_2 (Length: 230)
Name: NF16406_high_2
Description: NF16406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16406_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 8673808 - 8673610
Alignment:
| Q |
18 |
caattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673808 |
caattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggt |
8673709 |
T |
|
| Q |
118 |
aacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagtagggggccgttgttcgaaatcaacattcacttcatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8673708 |
aacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacggtagggggccgttgttcgaaatcaacattcacttcatc |
8673610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 8674448 - 8674647
Alignment:
| Q |
18 |
caattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggt |
117 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||| || | |
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| T |
8674448 |
caattttccttctcttattctggaagcataaatcctccacattattagtgaaaccttctgcagaacttttgaaattattgaagtcagttgaaaaaccgat |
8674547 |
T |
|
| Q |
118 |
aacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta----gggggccgttgttcgaaatcaacattcacttc |
213 |
Q |
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||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
8674548 |
aacttccctgtttct---tggtggctgcctaactaagtcaccattttgaccccaggaaacggtatttggggagccgttgttcgaaatcaacattcacttc |
8674644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 23438293 - 23438096
Alignment:
| Q |
22 |
tttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggtaact |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| | |||||| |
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| T |
23438293 |
tttccttctcttattctgagagcataaatcctccacatcattagtgaaaccttctgcagaacttttgaaattattgaagtcagttgaaaaccccgtaact |
23438194 |
T |
|
| Q |
122 |
tccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttcgaaatcaacattcacttcatc |
216 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
23438193 |
tccctgtttctgagtagtggctgcctaactaagtcaccattttgaccccaggaaacggtatttgggggccgttgttcgaaatcaacactcacttcatc |
23438096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 23439083 - 23439284
Alignment:
| Q |
18 |
caattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggt |
117 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| || |
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| T |
23439083 |
caattttctttctcttattctgagagcataaatcctccacatcattagtgaaaccttctgcagaacttttgaaagtattgaagtcagttgaaaaattgga |
23439182 |
T |
|
| Q |
118 |
aacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttcgaaatcaacattcacttca |
214 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
23439183 |
aacttccctgtttctgagtagtggcttcctaactaagtcaccattttgaccccaggaaacggtatttgggggccgttgttcgaaatcaacattcacttca |
23439282 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
|
|
| T |
23439283 |
tc |
23439284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 50508063 - 50507865
Alignment:
| Q |
18 |
caattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggt |
117 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||| |
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|
| T |
50508063 |
caattttccttctcttatgctgagagcatgaatgttccacatcattagcgaaaccttctgcggaacttttgaaattattgaagccagttgaaaaactggt |
50507964 |
T |
|
| Q |
118 |
aacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttcgaaatcaacattcacttc |
213 |
Q |
| |
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|| ||||| ||| ||||| | || |||||| |||||||| |||||||||||||||||||| ||| |||| | ||||||| |||||||||||||||| |
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| T |
50507963 |
aatttccccgttactgagcaatgactgccttactaagtcgccattttgaccccaggaaacggtatttggggcctgttgttccgaatcaacattcacttc |
50507865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 10783348 - 10783503
Alignment:
| Q |
22 |
tttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatcggtaact |
121 |
Q |
| |
|
|||||||||||||| | |||||| ||| |||| |||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||| |
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| T |
10783348 |
tttccttctcttatgttgggagcatgaatgctccgcatcattagtgaaaccttctgtggaatttttgaaattattgaagttagttgaaaaactggtaact |
10783447 |
T |
|
| Q |
122 |
tccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaac |
177 |
Q |
| |
|
| || ||| ||||| |||| | |||| |||||||| |||||||||||||||||||| |
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|
| T |
10783448 |
ttcccgttactgagcagtgtcggccttactaagtcgccattttgaccccaggaaac |
10783503 |
T |
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