View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16406_low_1 (Length: 427)

Name: NF16406_low_1
Description: NF16406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16406_low_1
NF16406_low_1
[»] chr7 (9 HSPs)
chr7 (11-234)||(42513062-42513285)
chr7 (11-161)||(30456307-30456456)
chr7 (87-234)||(38572287-38572434)
chr7 (11-161)||(30452702-30452847)
chr7 (21-133)||(11206499-11206611)
chr7 (10-190)||(41712265-41712443)
chr7 (22-186)||(49017102-49017266)
chr7 (21-135)||(6102928-6103043)
chr7 (240-273)||(38572462-38572495)
[»] chr3 (10 HSPs)
chr3 (11-211)||(36326442-36326640)
chr3 (72-234)||(30911982-30912144)
chr3 (60-232)||(55211737-55211905)
chr3 (21-107)||(14029381-14029467)
chr3 (80-234)||(32414663-32414821)
chr3 (58-147)||(33328218-33328306)
chr3 (11-50)||(30912146-30912185)
chr3 (25-67)||(32414847-32414889)
chr3 (240-273)||(30911921-30911954)
chr3 (239-275)||(55211934-55211970)
[»] chr6 (7 HSPs)
chr6 (9-234)||(4834644-4834871)
chr6 (11-234)||(7415566-7415789)
chr6 (11-218)||(7422590-7422797)
chr6 (11-231)||(7426516-7426736)
chr6 (11-234)||(33242776-33242998)
chr6 (11-113)||(13886589-13886691)
chr6 (164-234)||(13886515-13886585)
[»] chr5 (6 HSPs)
chr5 (10-234)||(8123455-8123679)
chr5 (276-408)||(4287435-4287567)
chr5 (21-234)||(671389-671602)
chr5 (10-138)||(41709523-41709651)
chr5 (11-161)||(24108697-24108848)
chr5 (11-91)||(10321869-10321949)
[»] chr1 (6 HSPs)
chr1 (11-234)||(18583886-18584109)
chr1 (11-161)||(23405475-23405625)
chr1 (11-101)||(21075941-21076031)
chr1 (171-234)||(13087634-13087696)
chr1 (21-101)||(9893803-9893883)
chr1 (21-138)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (11-152)||(44761976-44762117)
chr8 (11-152)||(44765283-44765424)
[»] chr4 (8 HSPs)
chr4 (11-161)||(27387620-27387770)
chr4 (11-143)||(55322334-55322467)
chr4 (121-234)||(20441029-20441141)
chr4 (11-152)||(36050673-36050813)
chr4 (11-152)||(36053932-36054072)
chr4 (21-135)||(24733642-24733756)
chr4 (238-273)||(36050519-36050554)
chr4 (238-273)||(36053778-36053813)
[»] chr2 (5 HSPs)
chr2 (119-234)||(31211616-31211731)
chr2 (11-115)||(31211859-31211963)
chr2 (27-161)||(45327420-45327554)
chr2 (21-94)||(31193244-31193317)
chr2 (11-48)||(40400909-40400946)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 42513062 - 42513285
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 42513161  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | ||||||||||    
T  42513162 aataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctaga 42513261  T
Q  211 tccttctagactaaggtgagtcat 234  Q
    |||||||||| |||||||||||||    
T  42513262 tccttctagattaaggtgagtcat 42513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 30456456 - 30456307
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 161  Q
     ||||  |||| ||||||||||||||||| |||||||||||||||| ||||    
T  30456356 cataaggcatataatgcttatatagactt-tgcatactcataataagataa 30456307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 38572287 - 38572434
Alignment:
Q  87 attatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 186  Q
    |||||||| || ||| |||||||||||||  ||||||||| ||||||||||||| ||||| ||||||||| ||||||| |||| ||| |||||||||| |    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  187 tcccctaacaagataccttctagatccttctagactaaggtgagtcat 234  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38572387 tcccctaacaagataccttctagatccttttagattaaggtgagtcat 38572434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 30452847 - 30452702
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30452748  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 161  Q
     ||||  |||||||    ||||||||||| |||||||||||||||| ||||    
T  30452747 cataaggcatacaa----tatatagactt-tgcatactcataataagataa 30452702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  21 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacat 120  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||    
T  11206611 caattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcat 11206512  T
Q  121 acaatgcttatat 133  Q
    |||||| ||||||    
T  11206511 acaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 41712443 - 41712265
Alignment:
Q  10 ttgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 108  Q
    |||||||||  ||||||||||| ||||||||||||| || || |||| || |||||||||| || |||||| |||||  |||| ||  ||||||||||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagaga-aaactagagacaaaagaaaggaaatttgttatttt--tcattcattctc 41712347  T
Q  109 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatccc 190  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||    
T  41712346 ataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatccc 41712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 49017266 - 49017102
Alignment:
Q  22 aattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacata 121  Q
    ||||||| |||||||||||||||| || | |||| ||||||||||||| || |||||||||||  |||||||| |||||| | |||||||||||  ||||    
T  49017266 aattcgaatagggatcacactccataaattagagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcata 49017167  T
Q  122 caatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 186  Q
    ||||||||||| | ||||||| ||| ||||||||| ||||||||| |  ||||||||||||||||    
T  49017166 caatgcttatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatatca 49017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 6103043 - 6102928
Alignment:
Q  21 caattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagag-aaagaaaattcattatattattcattcattctcataataaaac 118  Q
    ||||||||||||| ||||||||||| || || |||| || |||||||||| || || ||| ||||||||||||||| |||||| ||||| || || |||     
T  6103043 caattcgagtaggaatcacactccataaattaagagaga-aaactagagataaaagcaaaaaaaattcattatatttttcattgattctaatcatgaaag 6102945  T
Q  119 atacaatgcttatatag 135  Q
    |||||||||||||||||    
T  6102944 atacaatgcttatatag 6102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
Q  240 cacattagtactcattattctaaatatcctatca 273  Q
    ||||||||||||||||||||||||||| ||||||    
T  38572462 cacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 36326640 - 36326442
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 36326541  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36326540 aataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagataccttctaga 36326443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 30912144 - 30911982
Alignment:
Q  72 agagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcacccca 171  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |    
T  30912144 agagaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcacccta 30912045  T
Q  172 acatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 234  Q
    ||||||||||||| ||||||||||||||||  || |||||||||||||| |||||||||||||    
T  30912044 acatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtcat 30911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 55211737 - 55211905
Alignment:
Q  60 aaactagagaaaagagaaaga-aaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataaca 158  Q
    |||||||||| |||||| | | |||||||||||||| |||||| |||||||||||||  |||||||     ||||||||||||||||| ||||||||| |    
T  55211737 aaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataaga 55211831  T
Q  159 taagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 232  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||| | ||||||| |||| |||| ||||||    
T  55211832 taagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtc 55211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 14029467 - 14029381
Alignment:
Q  21 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattct 107  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  14029467 caattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 32414821 - 32414663
Alignment:
Q  80 aaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgt----gcatactcataataacataagtgcaccccaacat 175  Q
    |||| |||||||||| || ||| |||||| ||||||  ||||||||| ||||||||||||||    ||| ||||| ||||| |||||||||||  |||||    
T  32414821 aaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacat 32414722  T
Q  176 actcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 234  Q
    ||| ||||| ||||||  |||| ||||||||||||||||| |||  |||||||||||||    
T  32414721 acttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcat 32414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 33328306 - 33328218
Alignment:
Q  58 agaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatac 147  Q
    |||||||| |||||| |||||| ||||| |||||||  ||||||  |||| || ||||| ||||||||||||||| |||||| |||||||    
T  33328306 agaaacta-agaaaaaagaaaggaaattgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatac 33328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 30912185 - 30912146
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaatt 50  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaatt 30912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 32414889 - 32414847
Alignment:
Q  25 tcgagtagggatcacactccagaattcagagggagaaactaga 67  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaactaga 32414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
Q  240 cacattagtactcattattctaaatatcctatca 273  Q
    ||||||||||||||||||||||| ||||||||||    
T  30911954 cacattagtactcattattctaagtatcctatca 30911921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 55211934 - 55211970
Alignment:
Q  239 ccacattagtactcattattctaaatatcctatcagt 275  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  55211934 ccacattagtgctccttattctaaatatcctatcagt 55211970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 4834871 - 4834644
Alignment:
Q  9 gttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 108  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  4834871 gttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  109 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagata--ccttc 206  Q
    ||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||  ||||     
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt 4834672  T
Q  207 tagatccttctagactaaggtgagtcat 234  Q
    |||||||||||||| |||||||||||||    
T  4834671 tagatccttctagattaaggtgagtcat 4834644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 7415789 - 7415566
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||| ||| | |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7415690  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||  |||||||||||||||||||||| ||  |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||  |||||||    
T  7415689 aataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctaga 7415590  T
Q  211 tccttctagactaaggtgagtcat 234  Q
    |||||||| | |||| ||||||||    
T  7415589 tccttctaaattaagatgagtcat 7415566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 7422797 - 7422590
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7422698  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||  |||||||||||||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||| | |||||||||||||||| ||||||||    
T  7422697 aataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctaga 7422598  T
Q  211 tccttcta 218  Q
    ||||||||    
T  7422597 tccttcta 7422590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 7426736 - 7426516
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctcat 7426637  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||  ||||||||| |||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||| ||||||||    
T  7426636 aataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctaga 7426537  T
Q  211 tccttctagactaaggtgagt 231  Q
    |||| ||||| |||| |||||    
T  7426536 tcctactagattaagatgagt 7426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 33242998 - 33242776
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||| ||||||||||||||| | |||| ||||||||||| | || |||||  |||||||||||||| |||||| ||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctcat 33242899  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 210  Q
    |||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||| ||  |||||| |    
T  33242898 aataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaaa 33242800  T
Q  211 tccttctagactaaggtgagtcat 234  Q
    ||||| ||||||||| ||| ||||    
T  33242799 tccttatagactaagatgactcat 33242776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 13886592  T
Q  111 aat 113  Q
    |||    
T  13886591 aat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 13886585 - 13886515
Alignment:
Q  164 gcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 234  Q
    |||||| |||||||| ||||| | ||| |||||| ||||||| |||||| ||||||| |||||||||||||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcat 13886515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 8123679 - 8123455
Alignment:
Q  10 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    |||||||||  ||||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctca 8123580  T
Q  110 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | | |||||||    
T  8123579 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatcttctag 8123480  T
Q  210 atccttctagactaaggtgagtcat 234  Q
    ||||||||||| |||||| ||||||    
T  8123479 atccttctagattaaggtcagtcat 8123455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 276 - 408
Target Start/End: Complemental strand, 4287567 - 4287435
Alignment:
Q  276 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4287567 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatc 4287468  T
Q  376 gttaaacatatagatttgagatttcattttctt 408  Q
    |||||||||||||||||||||||||||||||||    
T  4287467 gttaaacatatagatttgagatttcattttctt 4287435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 671602 - 671389
Alignment:
Q  21 caattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 119  Q
    |||||||||| ||||||||||| ||||| | | || |||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||  ||    
T  671602 caattcgagttgggatcacacttcagaaatta-agagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  120 tacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctag 219  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||| ||| | |||||||||||    
T  671503 tacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctag 671404  T
Q  220 actaaggtgagtcat 234  Q
    | |||||||||||||    
T  671403 attaaggtgagtcat 671389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  10 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattctca 41709552  T
Q  110 taataaaacatacaatgcttatatagact 138  Q
    ||||||  ||||||||| |||||||||||    
T  41709551 taataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 24108848 - 24108697
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||| ||||| ||||||| ||   |||| |||||||||||||| ||||||  |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta-aggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  110 taataaaacatacaatgcttatatagacttg-tgcatactcataataacataa 161  Q
    | |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataaaataa 24108697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattat 91  Q
    ||||||||  ||||| ||||||||||||||||||| |||| |||| || || ||||||| ||||||||| |||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 18583886 - 18584109
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    ||||||||  |||||||||||| ||| ||||||||||| || |||| || |||||||||| || |||||| ||||||| |||||| |||||| |||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagaga-aaactagagataaaagaaaggaaattcagtatatttttcattgattctca 18583984  T
Q  110 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 209  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||||||| ||||||||| || ||||||| |||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag 18584084  T
Q  210 atccttctagactaaggtgagtcat 234  Q
    ||||||||||| |||||||||||||    
T  18584085 atccttctagattaaggtgagtcat 18584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 23405475 - 23405625
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 23405574  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 161  Q
    |||||  ||||||||| ||| |||||||||||||||| |||| ||| ||||    
T  23405575 aataaggcatacaatgtttagatagacttgtgcatacacatagtaagataa 23405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 21075941 - 21076031
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 101  Q
    |||||||||  ||||||||||||||| ||||||||||||| || | ||||||||| ||| || |||||| ||||||| |||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcatt 21076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 13087696 - 13087634
Alignment:
Q  171 aacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 234  Q
    ||||||||| |||| |||||||||||| ||||||||||||| | |||||| |||||||||||||    
T  13087696 aacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcat 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 9893883 - 9893803
Alignment:
Q  21 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 101  Q
    ||||| ||||||| |||||||| || |||| || |  ||||||||||||  | ||||||||||||||||||||| ||||||    
T  9893883 caatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaagaaaattcattatatttttcatt 9893803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 13087817 - 13087701
Alignment:
Q  21 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattatt-cattcattctcataataaaaca 119  Q
    |||||||| |||| ||||||||||||||||  ||| |||    || ||| || |||||  ||||||||| |||| || ||||||||||||||||||  ||    
T  13087817 caattcgaataggtatcacactccagaatttcgagagaggt--taaagataaaagaaaataaattcattgtattttttcattcattctcataataaggca 13087720  T
Q  120 tacaatgcttatatagact 138  Q
    |||||| ||||||||||||    
T  13087719 tacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 44762117 - 44761976
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttcat 44762018  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcata 152  Q
    |||||  ||||||||| |||||||||||||||||||| ||||    
T  44762017 aataaggcatacaatgtttatatagacttgtgcatacacata 44761976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 44765424 - 44765283
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttcat 44765325  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcata 152  Q
    |||||   |||||||| |||||||||||||||||||| ||||    
T  44765324 aataaggaatacaatgtttatatagacttgtgcatacacata 44765283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 27387770 - 27387620
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 110  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||  |||||||||||||| ||||||| | || ||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaat 27387671  T
Q  111 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 161  Q
    ||| |  |||||||||||||||||||||||||||| ||| |||||| ||||    
T  27387670 aatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagataa 27387620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 55322334 - 55322467
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcatta-tattattcattcattctca 109  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||||||| |||| ||||||||| || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  110 taataaaacatacaatgcttatatagacttgtgc 143  Q
    |||| |  ||||||||||||||||||||||||||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgc 55322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 20441029 - 20441141
Alignment:
Q  121 acaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctaga 220  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||| |||||| |||| || ||||| |||||| |    
T  20441029 acaatgcttgtacagacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaa 20441127  T
Q  221 ctaaggtgagtcat 234  Q
     |||||||||||||    
T  20441128 ttaaggtgagtcat 20441141  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 36050813 - 36050673
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  110 taataaaacatacaatgcttatatagacttgtgcatactcata 152  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacata 36050673  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 36054072 - 36053932
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  110 taataaaacatacaatgcttatatagacttgtgcatactcata 152  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacata 36053932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 24733756 - 24733642
Alignment:
Q  21 caattcgagtagggatcacactccaga-attcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 119  Q
    |||||| |||||||||||||||  ||| ||| |||| || |||||||| | || |||||| |||||||||||||| ||||||| |||| || || |||||    
T  24733756 caattcaagtagggatcacactttagatattaagagaga-aaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaaca 24733658  T
Q  120 tacaatgcttatatag 135  Q
    ||||||||||||||||    
T  24733657 tacaatgcttatatag 24733642  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
Q  238 accacattagtactcattattctaaatatcctatca 273  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050554 accacattagtactcattattctaaatatcctatca 36050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
Q  238 accacattagtactcattattctaaatatcctatca 273  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053813 accacattagtactcattattctaaatatcctatca 36053778  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 31211731 - 31211616
Alignment:
Q  119 atacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttcta 218  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta 31211632  T
Q  219 gactaaggtgagtcat 234  Q
    || ||| |||||||||    
T  31211631 gattaaagtgagtcat 31211616  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 31211963 - 31211859
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 109  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || |||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattctca 31211865  T
Q  110 taataa 115  Q
    ||||||    
T  31211864 taataa 31211859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 45327420 - 45327554
Alignment:
Q  27 gagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaat 125  Q
    |||||||||||||||||||||| || |||| || ||| |||||| || |||||  ||||| |||||||| ||||||  |||||||||||| |||||||||    
T  45327420 gagtagggatcacactccagaaattaagagaga-aaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaat 45327518  T
Q  126 gcttatatagacttgtgcatactcataataacataa 161  Q
    |||||||||||||||||||||| |||| ||| ||||    
T  45327519 gcttatatagacttgtgcatacacatagtaagataa 45327554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 31193317 - 31193244
Alignment:
Q  21 caattcgagtagggatcacactccag-aattcagagggagaaactagagaaaagagaaagaaaattcattatatt 94  Q
    ||||||||||||||||||||||| || |||| |||| || ||||||||||  | |||||||||||| ||||||||    
T  31193317 caattcgagtagggatcacactctagaaattaagagaga-aaactagagatgaaagaaagaaaatttattatatt 31193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 40400909 - 40400946
Alignment:
Q  11 tgatacgattcaattcgagtagggatcacactccagaa 48  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaa 40400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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