View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16406_low_3 (Length: 294)
Name: NF16406_low_3
Description: NF16406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16406_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 54277677 - 54277414
Alignment:
| Q |
20 |
atagttttataattaattaattaaacatactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgcc |
119 |
Q |
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| T |
54277677 |
atagttttataattaattaattaaacatactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgcc |
54277578 |
T |
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| Q |
120 |
ttcaataagctttgttcattattttgtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgnnnnnnnccaatgaaagttatgt |
219 |
Q |
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| T |
54277577 |
ttcaataagctttgttcattattttgtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgaaacaaaccaatgaaagttatgt |
54277478 |
T |
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| Q |
220 |
tacttataactttagtatgaaacaatatgttttagattgaatctatgtacctttttcatctcac |
283 |
Q |
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| T |
54277477 |
tacttataactttagtatgaaacaatatgttttagattgaatctatgtacctttttcatctcac |
54277414 |
T |
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