View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_high_13 (Length: 273)
Name: NF16407_high_13
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 3317345 - 3317223
Alignment:
| Q |
140 |
ccactaacatatgccttcatattgaagacatgtgatcgtggagaaagcaaaagccaaaaatctaaaataaacataaaatgattagagaaacacaagaaga |
239 |
Q |
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| T |
3317345 |
ccactaacatatgccttcatattgaagacatgtgatcgtggagaaagcaaaagccaaaaatctaaaataaacataaaatgattagagaaacacaagaaga |
3317246 |
T |
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| Q |
240 |
tgacgtaaaccttatcagcctatg |
263 |
Q |
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|||||||||| |||||||||||| |
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| T |
3317245 |
-gacgtaaaccctatcagcctatg |
3317223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 3317465 - 3317386
Alignment:
| Q |
21 |
aaaaaaggtaggcttgatttactcatgcatctcaactcattgaaaaggtttgtgtctctctacttgtgtttctctaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3317465 |
aaaaaaggtaggcttgatttactcatgcatctcaactcattgaaaaggtttgtgtttctctacttgtgtttctctaatca |
3317386 |
T |
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