View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_high_18 (Length: 204)
Name: NF16407_high_18
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36202168 - 36202356
Alignment:
| Q |
1 |
gttattattattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgtaccaagc |
100 |
Q |
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| T |
36202168 |
gttattattattattatctgaatcagtcatatcttagaattacaagcacaggcaactaatagaaaaaacaaagtcttaattcatctataccgtaccaagc |
36202267 |
T |
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| Q |
101 |
ccttgtcaatctctaatctctccaaggtgatgttttccaaagtccaaactatgttcatgtttcgacttcagattttcatcatctctgct |
189 |
Q |
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| T |
36202268 |
ccttgtcaatctctaatctctccaaggtgatgttttccaaagtccaaactatgttcatgtttcgacttcagattttcatcatctctgct |
36202356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 36198800 - 36198939
Alignment:
| Q |
2 |
ttattattattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgtaccaagcc |
101 |
Q |
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| T |
36198800 |
ttattattattattctctgaactggtcatatcttaaaattacaagcacaagcaactgaccaaaaaagcaaagtgtaaattcatctatacc-taaaaagca |
36198898 |
T |
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| Q |
102 |
cttgtcaatctctaatctctccaaggtgatgttttccaaag |
142 |
Q |
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| T |
36198899 |
cttaccaatctctaatctctccaacattgtgttttccaaag |
36198939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 36214661 - 36214793
Alignment:
| Q |
8 |
ttattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgtaccaagcccttgtc |
107 |
Q |
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| T |
36214661 |
ttattattatctaaactggtcatatcttaaaattacaagcacatgcaactgaccgaataagcaaagtcttaattgatctatacca-acaaagcacttgtc |
36214759 |
T |
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| Q |
108 |
aatctctaatctctccaaggtgatgttttccaaa |
141 |
Q |
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| T |
36214760 |
aatctctaatctccccaacattgtgttttccaaa |
36214793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 36209877 - 36209923
Alignment:
| Q |
143 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgct |
189 |
Q |
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| T |
36209877 |
tccaaacgatgtgcatgtttcgacttcagattttcatcatctctgct |
36209923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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