View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_high_2 (Length: 774)
Name: NF16407_high_2
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 148 - 756
Target Start/End: Original strand, 17746925 - 17747539
Alignment:
| Q |
148 |
ctattataatcgttaaatgcaagacttttaatacgcactctcgcatccaagactcgacatgaagagtatgactttggtggacagatagcagatgatccaa |
247 |
Q |
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| T |
17746925 |
ctattataatcgttaaatgcaagacttttaatacgcactctcgcattcaagactcgacatggagaatatgacttttgtgggaagatagcagatgatccaa |
17747024 |
T |
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| Q |
248 |
caaatttatagttgtgctattttaatacacaaatttgccatgtgcactacctacaatcactatgtagatgatataattattcattgtat-----agtcga |
342 |
Q |
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| T |
17747025 |
caaatctatagttatgctattttaatacacaaatttgccatgtgcactacctacaatcactgtgtagatgatataattattcattgtattgtatagtcga |
17747124 |
T |
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| Q |
343 |
cactgatcaagaatgatgcattgacatataccaattcctcgagtacattatggaatattaacaaggttgcaatgccaaaaccacaaaaaccattcctgac |
442 |
Q |
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| T |
17747125 |
cactgatcaagaatgatgcattgacatataccaattcctcgagtacattctagaatattaacaaggttgcaatgccaaaaccacaaaaaccattcctgac |
17747224 |
T |
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| Q |
443 |
atagagagtaaccaactagtttgtctacttgattcattcagagagatccttctgaccacacaaaa-ttgatagtactgctgatcacacaccaagaaaatt |
541 |
Q |
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| T |
17747225 |
atagagagtaaccaactagtttgtctacttgattcattcagagagatccttctgaccacacaaaaattgatagtactgctgatcacacaccaagaaaatt |
17747324 |
T |
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| Q |
542 |
aaattatttattacccgtggcattaattaacctatcatatttcatataaatccaaaaccagacattaaaaattgacaaatactagtattatacaccacaa |
641 |
Q |
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| T |
17747325 |
aaattatttattacccgtggcattaattaacctatcatatttcatataaatccaaaaccagacattaaaaattgacaaatactagtattatacaccacaa |
17747424 |
T |
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| Q |
642 |
ttttaagcaaacataagataactggtagaaattaaataggtctgaggaccccatgttatagtggctttcttggcgtttaatcaagttacttaaccgacat |
741 |
Q |
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| T |
17747425 |
ttttaagcaaacataagataactggtagaaattaaataggtctgaggaccccatgttatagtggctttcttggcgtttaatcaagttacttaaccgacat |
17747524 |
T |
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| Q |
742 |
tgaccatacgttact |
756 |
Q |
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| T |
17747525 |
tgaccatacgttact |
17747539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 17746810 - 17746857
Alignment:
| Q |
5 |
atgaagagacatgtaggaactaaatggtcattgcatttaatgcagttg |
52 |
Q |
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| T |
17746810 |
atgaagagacatgtaggaactaaatggtcattgcatttaatgcagttg |
17746857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 17746894 - 17746938
Alignment:
| Q |
89 |
cgtcaaatctaactcaatcctgcaaaactaactattataatcgtt |
133 |
Q |
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| T |
17746894 |
cgtcaaatctaactccatcctgcaaaactaactattataatcgtt |
17746938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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