View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_high_5 (Length: 486)
Name: NF16407_high_5
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 52320175 - 52320650
Alignment:
| Q |
1 |
tttgttcttcaacagaaacctatgttactctgttattcttttaatggattaatcattgattcctgagtgactcactttccgatatttgatcaatggtggt |
100 |
Q |
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| T |
52320175 |
tttgttcttcaacagaaacctatgttactctgttattcttttaatggattaatcattgattcctgagtgactcactttccgatatttgatcaatggtggt |
52320274 |
T |
|
| Q |
101 |
aggtgaaccagttgcagaagtagctgtagaaatcgaattagttggtgtgtgtccttgaactgctaaattagaaggctgcaacagatttgcatcaggaacc |
200 |
Q |
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| T |
52320275 |
aggtgaaccagttgcagaagtagctgtagaaatcgaattagttggtgtgtgtccttgaactgctaaattagaaggctgcaacagatttgcatcaggaacc |
52320374 |
T |
|
| Q |
201 |
ttctccttagaagcattcatgttaactttaatcctgcattagtcaatttaatatgtttcatactacaaactaacgaagatcaattctgccaaactacact |
300 |
Q |
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| T |
52320375 |
ttctccttagaagcattcatgttaactttaatcctgcattagtcaatttaatatgtttcatactacaaactaacgaagatcaattctgccaaactacact |
52320474 |
T |
|
| Q |
301 |
aaaccgaataccacgatgagaaactttgtcgccatacaacaaagtgacctaattaaactggtggagttcacacggaaatttagacagtggttttaaactt |
400 |
Q |
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| T |
52320475 |
aaaccgaataccacgatgagaaactttgtcgccatacaacaaagtgacctaattaaactggtggagttcacacggaaatttagacagtggttttaaactt |
52320574 |
T |
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| Q |
401 |
acttgttatggatattaacatattcatcagtttcatcaagtatctcctcctgaaatgcacacaaaatttgatgatg |
476 |
Q |
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| T |
52320575 |
acttgttatggatattaacatattcatcagtttcatcaagtatctcctcctgaaatgcacacaaaatttgatgatg |
52320650 |
T |
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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 17537058 - 17537114
Alignment:
| Q |
110 |
agttgcagaagtagctgtagaaatcgaattagttggtgtgtgtccttgaactgctaa |
166 |
Q |
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|||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
17537058 |
agttgctgaagtagctgcagaaatcaaattagttggtgtgtgtccttgaactgctaa |
17537114 |
T |
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