View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_high_6 (Length: 384)
Name: NF16407_high_6
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_high_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 376
Target Start/End: Complemental strand, 44944369 - 44944003
Alignment:
| Q |
24 |
gcttgaacaactttgtattttcttaattccttagggacatattttatcgtgattaat----agcaatcctcnnnnnnnnnnnnnnnnnnnnatcatgatt |
119 |
Q |
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| T |
44944369 |
gcttgaacaactttatattttcttaattccttagggacatattttatcgtgattaattaatagcaatcctctttttttagttattttttttatcatgatt |
44944270 |
T |
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| Q |
120 |
aatggcgctattattcataggtttctagtcattttatctcttatggattttggtttcttctgcttcttaggtgt----------catagacagtcatatg |
209 |
Q |
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| T |
44944269 |
aatggcgctattattcataggtttctagtcattttatctcttatggattttggtttcttctgcttcttaggtgtttggagttgtcatagacagtcatatg |
44944170 |
T |
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| Q |
210 |
gatgacttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttcagtgatcaaaattttagatggatagga |
309 |
Q |
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| T |
44944169 |
gatgccttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgcctattttgttttttcagtgatcaaaattttagatggatagga |
44944070 |
T |
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| Q |
310 |
tttagtgttctctagtatgatccacttaacattttaatttataatttcatcttcaggaaagtattat |
376 |
Q |
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| T |
44944069 |
tttaatgttctctagtatgatccatttaacattttaatttataatttcatcttcaggaaagtattat |
44944003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 373
Target Start/End: Complemental strand, 44950086 - 44949923
Alignment:
| Q |
210 |
gatgacttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttcagtgatcaaaattttagatggatag-g |
308 |
Q |
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| T |
44950086 |
gatgtcttaaaataatgatcattttgtctacattgt-cataatgacttgtcatagtgcctatttcattttttccatgttcaaaattttagatggatagtg |
44949988 |
T |
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| Q |
309 |
atttagtgttctctagtatgatccacttaacattttaatttataatttcatcttcaggaaagtat |
373 |
Q |
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| T |
44949987 |
ttcaaaggttctctattatgattgacttaacgttttaatttataatttcatcttcgggaaagtat |
44949923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 369
Target Start/End: Complemental strand, 6470926 - 6470769
Alignment:
| Q |
216 |
ttaaaataat-gatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttcagtgat-caaaattttagatggataggattta |
313 |
Q |
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| T |
6470926 |
ttaaaataattgatcattttgtgtacataatgcatattgacttgtcatagtgcctattttgttttttccatgttccaaaatttgagacggatagggttga |
6470827 |
T |
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| Q |
314 |
gtg-ttctctagta-tgatccacttaacattttaatttataatttcatcttcaggaaa |
369 |
Q |
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| T |
6470826 |
aagattctttattattgattcactcaccattttaatttataacttcattttcaggaaa |
6470769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 418925 - 418964
Alignment:
| Q |
337 |
aacattttaatttataatttcatcttcaggaaagtattat |
376 |
Q |
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| T |
418925 |
aacattttaatttataatttcattttcaggaaaatattat |
418964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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