View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16407_low_1 (Length: 784)
Name: NF16407_low_1
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_1 |
 | |
|
| [»] chr3 (16 HSPs) |
| |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 17 - 784
Target Start/End: Original strand, 1186173 - 1186928
Alignment:
| Q |
17 |
tagggacgacatcgaaattgaagaagacaggatcagtgaattgagcgactatcttctcagtcacatactctcctttttgaatgccaaagaggcagttcaa |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186173 |
tagggaagacattgaaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaa |
1186272 |
T |
|
| Q |
117 |
acttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186273 |
acttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagt |
1186372 |
T |
|
| Q |
217 |
tcatatctatgttgttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccgatggactcatgtgctcagtcgtgacctatacct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1186373 |
tcatatctatgttgttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccaatggactcatgtgctcagtcgtgacctatacct |
1186472 |
T |
|
| Q |
317 |
aaagactatagaataagcattttcacacaacgttcaatactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacact |
416 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186473 |
aaagactatagaatacgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacact |
1186572 |
T |
|
| Q |
417 |
ttaacgtctcttaatcttactggtaaagatttaatggttccctctggttattatcaaatattcccatgttctcactctttcaatctcccagcattaacca |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1186573 |
ttaacgtctcttaatcttactggtaaagatttaatggttccctctggttattatcaaatattcccatcttctcactctttcaatctcccagcattaacca |
1186672 |
T |
|
| Q |
517 |
ctctctctctcaagcacctttccttttgttttaaccatgatgatgatggttctgttgtcgaccccttttctacatttaacatgttgaatactttgatcat |
616 |
Q |
| |
|
|||||| ||| |||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1186673 |
ctctctatctaaagcacctttccttttcttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcat |
1186772 |
T |
|
| Q |
617 |
tgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaattcaactatacatatgtattctcgtatgtatggttgc |
716 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1186773 |
tgaccgctgtgtacttaggggtaatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactata------------cgtatgtatggttgc |
1186860 |
T |
|
| Q |
717 |
tattctaccatcaccaaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186861 |
tattctaccatcaccaaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
1186928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 31 - 784
Target Start/End: Complemental strand, 1304839 - 1304098
Alignment:
| Q |
31 |
aaattgaagaagacaggatcagtgaattgagcgactatcttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
130 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304839 |
aaattgaagaagacaggatgagtgaattgagcgaccatcttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
1304740 |
T |
|
| Q |
131 |
gaaaagatggatcaatctttggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304739 |
gaaaagatggatcaatctctggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg |
1304640 |
T |
|
| Q |
231 |
ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccgatggactcatgtgctcagtcgtgacctatacctaaagactatagaat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304639 |
ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccaatggactcatgtgctcagtcgtgacctatacctaaagactatagaat |
1304540 |
T |
|
| Q |
331 |
aagcattttcacacaacgttcaatactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacactttaacgtctcttaa |
430 |
Q |
| |
|
| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304539 |
acgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacactttaacgtctcttaa |
1304440 |
T |
|
| Q |
431 |
tcttactggtaaagatttaatggttccctctggttattatcaaatattcccatgttctcactctttcaatctcccagcattaaccactctctctctcaag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1304439 |
tcttactggtaaagatttaatggttccctctggttattatcaaatattcccatcttctcactctttcaatctcccagcattaaccactctctatctaaag |
1304340 |
T |
|
| Q |
531 |
cacctttccttttgttttaaccatgatgatgatggttctgttgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtac |
630 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1304339 |
cacctttccttttcttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtac |
1304240 |
T |
|
| Q |
631 |
ttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaattcaactatacatatgtattctcgtatgtatggttgctattctaccatcac |
730 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1304239 |
ttaggggtaatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactata------------cgtatgtatggttgctattctaccatcac |
1304152 |
T |
|
| Q |
731 |
caaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304151 |
caaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
1304098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 31 - 784
Target Start/End: Original strand, 1204251 - 1204992
Alignment:
| Q |
31 |
aaattgaagaagacaggatcagtgaattgagcgactatcttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
130 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204251 |
aaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
1204350 |
T |
|
| Q |
131 |
gaaaagatggatcaatctttggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204351 |
gaaaagatggatcaatctctggaagactctttccactcttacattaagtgttgatcattttagtacggaagaaagttttgaacagttcatatctatgttg |
1204450 |
T |
|
| Q |
231 |
ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccgatggactcatgtgctcagtcgtgacctatacctaaagactatagaat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204451 |
ttgtctcttcgtgatcactcaactgatatccattctctcgttttccacttccaatggactcatgtgctcagtcgtgacctatacctaaagactatagaat |
1204550 |
T |
|
| Q |
331 |
aagcattttcacacaacgttcaatactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacactttaacgtctcttaa |
430 |
Q |
| |
|
| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204551 |
acgccttttcgcacaacgttcaacactttcaaatcctttacaccgctgttaaacaccttccctcctgtttcttttcatctcacactttaacgtctcttaa |
1204650 |
T |
|
| Q |
431 |
tcttactggtaaagatttaatggttccctctggttattatcaaatattcccatgttctcactctttcaatctcccagcattaaccactctctctctcaag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1204651 |
tcttactggtaaagatttaatggttccctctggttggtatcaaatattcccatcttctcactctttcaatctcccagcattaaccactctctatctaaag |
1204750 |
T |
|
| Q |
531 |
cacctttccttttgttttaaccatgatgatgatggttctgttgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtac |
630 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1204751 |
cacctttccttttcttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtac |
1204850 |
T |
|
| Q |
631 |
ttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaattcaactatacatatgtattctcgtatgtatggttgctattctaccatcac |
730 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1204851 |
ttaggggtaatgcacaaaaccttcgcatttcatgtaccaagcttctcaatttaactata------------cgtatgtatggttgctattctaccatcac |
1204938 |
T |
|
| Q |
731 |
caaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1204939 |
caaaccggatttcaaaatctttttcggactagagttatatgctccaacacttca |
1204992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 480956 - 481055
Alignment:
| Q |
80 |
catactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacattaagt |
179 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
480956 |
catactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagt |
481055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 573 - 689
Target Start/End: Original strand, 476522 - 476635
Alignment:
| Q |
573 |
gtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagc |
672 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || || |||| |||||||||||||||||| ||||||||| |
|
|
| T |
476522 |
gtcgaccccttttccacatttaacatgttgaatactttgatcattgacttatgtgtaattctgg---atgcacaaaaccttcgcatttcaagtaccaagc |
476618 |
T |
|
| Q |
673 |
ttctcaattcaactata |
689 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
476619 |
ttctcaatttaactata |
476635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 778283 - 778181
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacatta |
176 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| | ||| |||||||||||||| |
|
|
| T |
778283 |
tcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacatta |
778184 |
T |
|
| Q |
177 |
agt |
179 |
Q |
| |
|
||| |
|
|
| T |
778183 |
agt |
778181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 572 - 689
Target Start/End: Complemental strand, 8032918 - 8032801
Alignment:
| Q |
572 |
tgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaag |
671 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||||||||||||| ||||||| |
|
|
| T |
8032918 |
tgtcgatcccttttctgcatttaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaag |
8032819 |
T |
|
| Q |
672 |
cttctcaattcaactata |
689 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
8032818 |
cttgtcaatttaactata |
8032801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 476041 - 476143
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacatta |
176 |
Q |
| |
|
||||| |||||||||||| || |||||||| || ||||||||||| |||||||| ||||||||||||||||| ||||| |||||| |||| |||||| || |
|
|
| T |
476041 |
tcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccacccttacacta |
476140 |
T |
|
| Q |
177 |
agt |
179 |
Q |
| |
|
||| |
|
|
| T |
476141 |
agt |
476143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 572 - 698
Target Start/End: Original strand, 481454 - 481577
Alignment:
| Q |
572 |
tgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaag |
671 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| || |||| | ||||||| |||||||| |||||||| |
|
|
| T |
481454 |
tgtcgaccccttttccgcatttaacatgttggatactttgatcattgactgctgtgtacttctgg---atgcacgaaacctttgcatttcaagtaccaag |
481550 |
T |
|
| Q |
672 |
cttctcaattcaactatacatatgtat |
698 |
Q |
| |
|
||||||| || ||||||| ||||||| |
|
|
| T |
481551 |
cttctcagtttaactatatgtatgtat |
481577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 698
Target Start/End: Complemental strand, 5360654 - 5360515
Alignment:
| Q |
556 |
atgatgatggttctgttgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcg |
655 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||| | |||||| ||||||| ||| |
|
|
| T |
5360654 |
atgatgatggtt---ttgtcgaccccttttccgaatttaacatgttgtctactttgagcattgaccgctgtgtacttcttgctaatgcacaaaaccatcg |
5360558 |
T |
|
| Q |
656 |
catttcatgtaccaagcttctcaattcaactatacatatgtat |
698 |
Q |
| |
|
|||||| ||||||||| | | |||| ||||||||| |||||| |
|
|
| T |
5360557 |
tatttcaagtaccaagcctgttaatttaactatacaaatgtat |
5360515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 5361114 - 5361014
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacatta |
176 |
Q |
| |
|
|||||| ||||||||||| || | |||| | || | ||||||||||||||||| |||||||||| |||||| |||||||||||| | |||||| ||||| |
|
|
| T |
5361114 |
tcacatgctctcctttttaaacgtcaaaaaagccatccaaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcatta |
5361015 |
T |
|
| Q |
177 |
a |
177 |
Q |
| |
|
| |
|
|
| T |
5361014 |
a |
5361014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 699
Target Start/End: Original strand, 1187099 - 1187145
Alignment:
| Q |
653 |
tcgcatttcatgtaccaagcttctcaattcaactatacatatgtatt |
699 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1187099 |
tcgcatttcatgtaccaagcttctcaatttaactctacatatgtatt |
1187145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 45870568 - 45870515
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
130 |
Q |
| |
|
||||||||| || |||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
45870568 |
tcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatc |
45870515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 777964 - 777923
Alignment:
| Q |
399 |
ttcttttcatctcacactttaacgtctcttaatcttactggt |
440 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
777964 |
ttcttttcatgtcaaactttaacgtctcttaatctttctggt |
777923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 2996562 - 2996509
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc |
130 |
Q |
| |
|
||||||||| || |||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
2996562 |
tcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatc |
2996509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 8033076 - 8033035
Alignment:
| Q |
399 |
ttcttttcatctcacactttaacgtctcttaatcttactggt |
440 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
8033076 |
ttcttttcatcgcacaccttaacgtctcttactcttactggt |
8033035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 5282 - 5418
Alignment:
| Q |
40 |
aagacaggatcagtgaattgagcgactatcttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatg |
139 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||| ||||||||| ||||||||||| | | |||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
5282 |
aagacaggatcagtgtattggccgactgtcttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatg |
5381 |
T |
|
| Q |
140 |
gatcaatctttggaagactctttccactcttacatta |
176 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5382 |
gatcaatctctggaagactcttcccactcttacatta |
5418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 5807 - 5914
Alignment:
| Q |
582 |
ttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaatt |
681 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
5807 |
ttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatt |
5906 |
T |
|
| Q |
682 |
caactata |
689 |
Q |
| |
|
||||||| |
|
|
| T |
5907 |
taactata |
5914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 43875309 - 43875203
Alignment:
| Q |
70 |
ttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactct |
169 |
Q |
| |
|
|||||| ||||||| | |||||||| ||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
43875309 |
ttctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactct |
43875210 |
T |
|
| Q |
170 |
tacatta |
176 |
Q |
| |
|
||||||| |
|
|
| T |
43875209 |
tacatta |
43875203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 43864142 - 43864051
Alignment:
| Q |
70 |
ttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctt |
161 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| |||| ||||||||||||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
43864142 |
ttctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtctt |
43864051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 43867633 - 43867524
Alignment:
| Q |
70 |
ttctcagtcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactct |
169 |
Q |
| |
|
|||||| |||| |||| ||||||||||| || |||||||| | ||||||||||||||| || ||||||||||||| ||| |||||| |||| | ||| | |
|
|
| T |
43867633 |
ttctcattcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaagggtcttcctactat |
43867534 |
T |
|
| Q |
170 |
tacattaagt |
179 |
Q |
| |
|
|||||||||| |
|
|
| T |
43867533 |
tacattaagt |
43867524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 689
Target Start/End: Complemental strand, 43867167 - 43867038
Alignment:
| Q |
557 |
tgatgatggttctgttgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgc |
656 |
Q |
| |
|
||||| ||||| ||| ||||| |||||||| |||||||||||||||||| ||||||||||||| ||| || || || |||| ||||||||| || |
|
|
| T |
43867167 |
tgatgctggttgtgtcgtcgagcccttttcgacatttaacatgttgaatcgtttgatcattgacagttgtatagttcagg---atgcacaaaacctttgc |
43867071 |
T |
|
| Q |
657 |
atttcatgtaccaagcttctcaattcaactata |
689 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
43867070 |
atatcaagtaccaagcttgtcaatttaactata |
43867038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 572 - 695
Target Start/End: Complemental strand, 43874836 - 43874716
Alignment:
| Q |
572 |
tgtcgaccccttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaag |
671 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| ||||||||||||| ||| || || || |||| ||||||||| |||| ||| |||||||| |
|
|
| T |
43874836 |
tgtcgagcccttttcaacatttaacatgttgaatcgtttgatcattgacagttgtttagttcagg---atgcacaaaacctttgcatatcaagtaccaag |
43874740 |
T |
|
| Q |
672 |
cttctcaattcaactatacatatg |
695 |
Q |
| |
|
||| |||||| |||||||| |||| |
|
|
| T |
43874739 |
cttgtcaatttaactatacttatg |
43874716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 38989116 - 38989212
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttaca |
173 |
Q |
| |
|
||||||||| |||||| | || || | | |||| |||||||| ||| |||| || ||||||||||||| ||| ||||||| |||||||||| ||||| |
|
|
| T |
38989116 |
tcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaagagtctttccactattaca |
38989212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 38989600 - 38989641
Alignment:
| Q |
579 |
cccttttctacatttaacatgttgaatactttgatcattgac |
620 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
38989600 |
cccttttccacatttaaaatgttgaatagtttgatcattgac |
38989641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 33958146 - 33958061
Alignment:
| Q |
91 |
ttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacatta |
176 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
33958146 |
ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta |
33958061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 26291426 - 26291533
Alignment:
| Q |
582 |
ttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaatt |
681 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26291426 |
ttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatt |
26291525 |
T |
|
| Q |
682 |
caactata |
689 |
Q |
| |
|
||||||| |
|
|
| T |
26291526 |
taactata |
26291533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 26304683 - 26304790
Alignment:
| Q |
582 |
ttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaatt |
681 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26304683 |
ttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatt |
26304782 |
T |
|
| Q |
682 |
caactata |
689 |
Q |
| |
|
||||||| |
|
|
| T |
26304783 |
taactata |
26304790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 26338038 - 26338145
Alignment:
| Q |
582 |
ttttctacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttctcaatt |
681 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26338038 |
ttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaatt |
26338137 |
T |
|
| Q |
682 |
caactata |
689 |
Q |
| |
|
||||||| |
|
|
| T |
26338138 |
taactata |
26338145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 52186834 - 52186931
Alignment:
| Q |
82 |
tactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactcttacattaagt |
179 |
Q |
| |
|
||||||||||| |||| || ||| |||| |||||||| |||||||| || ||||||||||||| ||| |||| || |||| ||||||||||| ||||| |
|
|
| T |
52186834 |
tactctcctttctgaacgcaaaacaggccgttcaaacctgcattttgtccaaaagatggatcattctctggaggagtcttcccactcttacactaagt |
52186931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 6889148 - 6889225
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaa |
154 |
Q |
| |
|
|||||||||||| |||||| | ||| ||| || ||||||||||||||| |||| |||||||||| |||||| ||||| |
|
|
| T |
6889148 |
tcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaa |
6889225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 6844163 - 6844223
Alignment:
| Q |
111 |
gttcaaacttgcattttatcgaaaagatggatcaatctttggaagactctttccactctta |
171 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
6844163 |
gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactctta |
6844223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 32413626 - 32413704
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaag |
155 |
Q |
| |
|
|||||||||||||| |||||| ||||| | || ||||||||||||||||| || | |||||||| ||||| |||||| |
|
|
| T |
32413626 |
tcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaag |
32413704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 7140812 - 7140748
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatgga |
141 |
Q |
| |
|
|||||||||||| ||||||||| | ||| | |||||||||||||| ||||| || |||||||||| |
|
|
| T |
7140812 |
tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga |
7140748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 8680426 - 8680362
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatgga |
141 |
Q |
| |
|
|||||||||||| ||||||||| | ||| | |||||||||||||| ||||| || |||||||||| |
|
|
| T |
8680426 |
tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga |
8680362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 7115622 - 7115544
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaag |
155 |
Q |
| |
|
|||||||||||| |||||||| ||||| | |||||||||||||| |||| || |||||||||| ||||| |||||| |
|
|
| T |
7115622 |
tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag |
7115544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 7120694 - 7120616
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaag |
155 |
Q |
| |
|
|||||||||||| |||||||| ||||| | |||||||||||||| |||| || |||||||||| ||||| |||||| |
|
|
| T |
7120694 |
tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag |
7120616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 7124098 - 7124020
Alignment:
| Q |
77 |
tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctttggaag |
155 |
Q |
| |
|
|||||||||||| |||||||| ||||| | |||||||||||||| |||| || |||||||||| ||||| |||||| |
|
|
| T |
7124098 |
tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaag |
7124020 |
T |
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