View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_low_13 (Length: 297)
Name: NF16407_low_13
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 26303040 - 26303309
Alignment:
| Q |
18 |
agagaagatttcatggaactgtgctttgtttgtggcattgatgttggttttgagcttctgcgaatcaaacacaagtgatgatgagttgaatgttcagata |
117 |
Q |
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| T |
26303040 |
agagaagatttcatggaactgtgctttgtttgtggcattgatgttggttttgagcttctgcgaatcaaacacaagtgatgatgagttgaatgttcagata |
26303139 |
T |
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| Q |
118 |
cagaatatgcttcaagagaatgattttagtaatactaatatgaacaacaacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaa |
217 |
Q |
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| T |
26303140 |
cagaatatgcttcaagagaatgattttagtaatactcatgtgaacaaaaacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaa |
26303239 |
T |
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| Q |
218 |
caataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatgatcctgatgatgt |
287 |
Q |
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| T |
26303240 |
caataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 45924385 - 45924497
Alignment:
| Q |
175 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatg |
274 |
Q |
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| T |
45924385 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
45924484 |
T |
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| Q |
275 |
atcctgatgatgt |
287 |
Q |
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| T |
45924485 |
atccagatgatgt |
45924497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 45936333 - 45936445
Alignment:
| Q |
175 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatccacatattcatg |
274 |
Q |
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| T |
45936333 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
45936432 |
T |
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| Q |
275 |
atcctgatgatgt |
287 |
Q |
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| T |
45936433 |
atccagatgatgt |
45936445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 42240294 - 42240170
Alignment:
| Q |
163 |
aacaacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaaatgtggtgatccttacattgttgaagagaatc |
262 |
Q |
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|||||||||| ||||||||||||||| || ||| | || |||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
42240294 |
aacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatc |
42240195 |
T |
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| Q |
263 |
cacatattcatgatcctgatgatgt |
287 |
Q |
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| T |
42240194 |
cacatattcatgacccagatgatgt |
42240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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