View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16407_low_16 (Length: 267)

Name: NF16407_low_16
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16407_low_16
NF16407_low_16
[»] chr7 (5 HSPs)
chr7 (14-265)||(31013610-31013865)
chr7 (141-211)||(19974775-19974845)
chr7 (165-223)||(20001140-20001198)
chr7 (128-211)||(47606599-47606682)
chr7 (169-211)||(19981472-19981514)
[»] chr3 (9 HSPs)
chr3 (45-266)||(53067875-53068097)
chr3 (46-219)||(53058940-53059117)
chr3 (46-230)||(37418217-37418402)
chr3 (69-237)||(53340996-53341174)
chr3 (46-230)||(53062121-53062315)
chr3 (130-208)||(53972116-53972194)
chr3 (127-197)||(23224663-23224733)
chr3 (128-221)||(13451020-13451113)
chr3 (129-193)||(13450913-13450977)
[»] chr2 (1 HSPs)
chr2 (80-228)||(6687146-6687301)
[»] chr4 (1 HSPs)
chr4 (132-205)||(56164454-56164527)
[»] scaffold0543 (1 HSPs)
scaffold0543 (132-209)||(4129-4206)
[»] scaffold0492 (1 HSPs)
scaffold0492 (132-209)||(5675-5752)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 31013610 - 31013865
Alignment:
Q  14 caaaggcaataatattatcagaattgctatatatgtccaagtcgaagaagaatctgcgatcatcgtttccaatagaagagtgcgacagggttagctccct 113  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  31013610 caaaggcaataatattatcagaatttctatatatgtccaagtcgaagaagaatcagcgatcatcgattccaatagaagagtgcgacagggatagctccct 31013709  T
Q  114 tccggactcaattatc----acattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctca 209  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013710 tccggactcaattatctgtcacattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctca 31013809  T
Q  210 gtcttcactctcgatttcaccaatcacaatgtcttcatcaaaacaaccactctttg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013810 gtcttcactctcgatttcaccaatcacaatgtcttcatcaaaacaaccactctttg 31013865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 19974845 - 19974775
Alignment:
Q  141 tttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagt 211  Q
    ||||||||||||||| |  | | |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  19974845 tttctaccaaccaaaaaatctgccgccacaagcatcctttcaaagagatggaaaccactatggctctcagt 19974775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 20001198 - 20001140
Alignment:
Q  165 gccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcga 223  Q
    |||||||||||||| || ||||| ||||||||| ||||||||||||| | |||||||||    
T  20001198 gccacaagcatcctctctaagagatggaaaccaatatggctctcagtttccactctcga 20001140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 47606682 - 47606599
Alignment:
Q  128 tcacattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagt 211  Q
    ||||||||| || ||||| |||||||||  || ||  || ||||||||||| |||||||| ||||| ||| |||||||||||||    
T  47606682 tcacattctatcttttctcccaaccaaactcagcgcagctacaagcatcctctcaaagagatggaacccactatggctctcagt 47606599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 19981514 - 19981472
Alignment:
Q  169 caagcatcctttcaaagaggtggaaaccattatggctctcagt 211  Q
    ||||| |||| |||||||| |||||||||||||||||||||||    
T  19981514 caagcgtcctctcaaagagatggaaaccattatggctctcagt 19981472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 45 - 266
Target Start/End: Original strand, 53067875 - 53068097
Alignment:
Q  45 tatgtccaagtcgaagaagaatctgcgatcatcgtttccaatagaagagtgcgacagggttagctcccttccggactcaattatc----acattctctcc 140  Q
    |||||||||||||||||||   | |||||||||| |||||||||||||| || ||| ||||||||||||||||||||| ||||||    |||||||||||    
T  53067875 tatgtccaagtcgaagaag---cggcgatcatcgattccaatagaagagcgcaacaaggttagctcccttccggactcgattatctatcacattctctcc 53067971  T
Q  141 tttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttcaccaatcacaatg 240  Q
    ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||       
T  53067972 tttctcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattatggctctcagtcttcactctcaatttcaccgatcacataa 53068071  T
Q  241 tcttcatcaaaacaaccactctttgc 266  Q
    ||||||  |||||||||||| |||||    
T  53068072 tcttcacgaaaacaaccactatttgc 53068097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 53058940 - 53059117
Alignment:
Q  46 atgtccaagtcgaagaagaatctgcgatcatcgtttccaatagaagagtgcgacagggttagctcccttccggactcaattatc----acattctctcct 141  Q
    |||||||||||||||||| | |    ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    ||||||||||||    
T  53058940 atgtccaagtcgaagaagcagcgatcatcatcgattccaattgaagagtgtgacagggttagctcccttccggactcaattatctgtcacattctctcct 53059039  T
Q  142 ttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactc 219  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||    
T  53059040 ttctcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattgtggctctcagtcctcactc 53059117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 37418217 - 37418402
Alignment:
Q  46 atgtccaagtcgaagaagaatctgcgatcatcgtttccaatagaagagtgcgacagggttagctcccttccggactcaatta----tcacattctctcct 141  Q
    ||||||||||||||||||   |  ||||||| | |||||| |||| ||||||||||||||||||||||||| ||||||||||    ||| ||||||||||    
T  37418217 atgtccaagtcgaagaag---caacgatcatggattccaacagaaaagtgcgacagggttagctcccttccagactcaattatctgtcatattctctcct 37418313  T
Q  142 ttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttcacc 230  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  37418314 ttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgatttcacc 37418402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 53341174 - 53340996
Alignment:
Q  69 gcgatcatcgtttccaatagaagagtg------cgacagggttagctcccttccggactcaattatc----acattctctcctttctaccaaccaaagac 158  Q
    |||||||||| | ||||||||||||||      ||||||||||||||||||||| ||||||||||||    |||||||||||||||| ||||||||||||    
T  53341174 gcgatcatcgataccaatagaagagtgtgagtacgacagggttagctcccttccagactcaattatctgtcacattctctcctttctcccaaccaaagac 53341075  T
Q  159 accgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttcaccaatcaca 237  Q
    |||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||| ||| ||||||    
T  53341074 accgtcgccacaagcatcctctcaaagaggtggaaaccattatgtatctcagtcctcactctcgattttaccgatcaca 53340996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 53062121 - 53062315
Alignment:
Q  46 atgtccaagtcgaagaagaatctgcgatcatcgtttccaatagaagagtgcgacagggttag-ctcccttccggactcaatta---------tcacattc 135  Q
    |||||||||||||||||| | |    ||||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||| |          ||||||||    
T  53062121 atgtccaagtcgaagaagcagcgatcatcatcgattccaattgaagagtgtgacagggttagtctcccttccagactcaactcaactatctgtcacattc 53062220  T
Q  136 tctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttcacc 230  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||    
T  53062221 tctcctttctcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattatggctctatgtcttcactctcgatttcacc 53062315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 53972194 - 53972116
Alignment:
Q  130 acattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctc 208  Q
    |||| ||||| ||||| |||||||||||| ||| | |||||| |||||| |||||||||||||| ||||||||| ||||    
T  53972194 acatactctcttttcttccaaccaaagactccgcccccacaaccatcctctcaaagaggtggaagccattatggatctc 53972116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 23224733 - 23224663
Alignment:
Q  127 atcacattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaacca 197  Q
    ||||||||||||||| ||| || ||||||||||| | || ||||||||| || ||| |||| |||||||||    
T  23224733 atcacattctctcctgtcttcccaccaaagacacagccgtcacaagcattctctcagagagatggaaacca 23224663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 13451113 - 13451020
Alignment:
Q  128 tcacattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctc 221  Q
    ||||||| |||| ||||||||||||||| |  |||  |||||||| ||||| |||||||| |||||  || ||||||| | |||| ||||||||    
T  13451113 tcacattgtctcttttctaccaaccaaacatgccgctgccacaagtatcctctcaaagagatggaagtcactatggcttttagtcctcactctc 13451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 13450977 - 13450913
Alignment:
Q  129 cacattctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaa 193  Q
    ||||||||||||||||| ||||||||| || ||| ||||||||| || || | |||||| |||||    
T  13450977 cacattctctcctttcttccaaccaaacacgccgccgccacaagtattctgtgaaagagatggaa 13450913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 6687146 - 6687301
Alignment:
Q  80 ttccaatagaagagtgcgacagggttagctcccttccggactcaattat----cacattctctcctttctaccaaccaaagaca---ccgtcgccacaag 172  Q
    |||||| |||| ||| |||||||||||||||||||||  ||||||||||    || |||||||| ||||| |||||||||||||   | |||||||||||    
T  6687146 ttccaaaagaatagtacgacagggttagctcccttccatactcaattatttgtcatattctctcatttcttccaaccaaagacagtactgtcgccacaag 6687245  T
Q  173 catcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttca 228  Q
    |||||| || ||||| |||||||||||||||||||||||||| |||||||||||||    
T  6687246 catcctctcgaagagatggaaaccattatggctctcagtcttaactctcgatttca 6687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 56164454 - 56164527
Alignment:
Q  132 attctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggct 205  Q
    |||||||| ||||| |||||||||||| | |||||||||||| |||| || |||  |||||| |||||||||||    
T  56164454 attctctcttttctcccaaccaaagactcggtcgccacaagcgtcctctcgaagcagtggaatccattatggct 56164527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 4206 - 4129
Alignment:
Q  132 attctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctca 209  Q
    ||||| |||||||| || ||||||||| | | ||||||||  ||||| ||||| |||||||| ||| |||||||||||    
T  4206 attctttcctttcttccgaccaaagacgctgccgccacaacaatcctatcaaaaaggtggaagccactatggctctca 4129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 5752 - 5675
Alignment:
Q  132 attctctcctttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctca 209  Q
    ||||| |||||||| || ||||||||| | | ||||||||  ||||| ||||| |||||||| ||| |||||||||||    
T  5752 attctttcctttcttccgaccaaagacgctgccgccacaacaatcctatcaaaaaggtggaagccactatggctctca 5675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University