View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16407_low_17 (Length: 258)
Name: NF16407_low_17
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 48252297 - 48252064
Alignment:
| Q |
18 |
atttgctgcattatttcaacaatgaaattgattaatacaaggttgatatttatagagaccgaggaattctattctatatcaaagggatacaaatgcctct |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48252297 |
atttgctgcattatttgaacaatgaaattgattaatacaaggttgatatttatagagaccgaggaattctattctatatcaaagggatacaaatgcctct |
48252198 |
T |
|
| Q |
118 |
catataacaagacatacagcaaaacaaacaaatgatgagcaaggaagatcaacttggcttgctactaatacagttctattcagttccggcaattttcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48252197 |
catataacaagacatacagcaaaacaaacaaatgatgagcaaggaagatcaacttggcttgctactaatacagttctattcagttccggcaattttcttc |
48252098 |
T |
|
| Q |
218 |
ttcagtgcatcaatatccgtagctagttcatttc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
48252097 |
ttcagtgcatcaatatccgtagctagttcctttc |
48252064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University