View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16407_low_2 (Length: 774)

Name: NF16407_low_2
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16407_low_2
NF16407_low_2
[»] chr5 (3 HSPs)
chr5 (148-756)||(17746925-17747539)
chr5 (5-52)||(17746810-17746857)
chr5 (89-133)||(17746894-17746938)


Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 148 - 756
Target Start/End: Original strand, 17746925 - 17747539
Alignment:
Q  148 ctattataatcgttaaatgcaagacttttaatacgcactctcgcatccaagactcgacatgaagagtatgactttggtggacagatagcagatgatccaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||  ||||||||||||||||||    
T  17746925 ctattataatcgttaaatgcaagacttttaatacgcactctcgcattcaagactcgacatggagaatatgacttttgtgggaagatagcagatgatccaa 17747024  T
Q  248 caaatttatagttgtgctattttaatacacaaatttgccatgtgcactacctacaatcactatgtagatgatataattattcattgtat-----agtcga 342  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||||    
T  17747025 caaatctatagttatgctattttaatacacaaatttgccatgtgcactacctacaatcactgtgtagatgatataattattcattgtattgtatagtcga 17747124  T
Q  343 cactgatcaagaatgatgcattgacatataccaattcctcgagtacattatggaatattaacaaggttgcaatgccaaaaccacaaaaaccattcctgac 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17747125 cactgatcaagaatgatgcattgacatataccaattcctcgagtacattctagaatattaacaaggttgcaatgccaaaaccacaaaaaccattcctgac 17747224  T
Q  443 atagagagtaaccaactagtttgtctacttgattcattcagagagatccttctgaccacacaaaa-ttgatagtactgctgatcacacaccaagaaaatt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17747225 atagagagtaaccaactagtttgtctacttgattcattcagagagatccttctgaccacacaaaaattgatagtactgctgatcacacaccaagaaaatt 17747324  T
Q  542 aaattatttattacccgtggcattaattaacctatcatatttcatataaatccaaaaccagacattaaaaattgacaaatactagtattatacaccacaa 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17747325 aaattatttattacccgtggcattaattaacctatcatatttcatataaatccaaaaccagacattaaaaattgacaaatactagtattatacaccacaa 17747424  T
Q  642 ttttaagcaaacataagataactggtagaaattaaataggtctgaggaccccatgttatagtggctttcttggcgtttaatcaagttacttaaccgacat 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17747425 ttttaagcaaacataagataactggtagaaattaaataggtctgaggaccccatgttatagtggctttcttggcgtttaatcaagttacttaaccgacat 17747524  T
Q  742 tgaccatacgttact 756  Q
    |||||||||||||||    
T  17747525 tgaccatacgttact 17747539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 17746810 - 17746857
Alignment:
Q  5 atgaagagacatgtaggaactaaatggtcattgcatttaatgcagttg 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17746810 atgaagagacatgtaggaactaaatggtcattgcatttaatgcagttg 17746857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 17746894 - 17746938
Alignment:
Q  89 cgtcaaatctaactcaatcctgcaaaactaactattataatcgtt 133  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  17746894 cgtcaaatctaactccatcctgcaaaactaactattataatcgtt 17746938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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