View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_low_3 (Length: 578)
Name: NF16407_low_3
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 5062959 - 5063313
Alignment:
| Q |
14 |
catcacaaaactagaaaaataatttttcgcgccatgagtgtccgttaccatacgcaaactcacttacacctcgttttactacaactaccaaatcacatct |
113 |
Q |
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| T |
5062959 |
catcacaaaactagaaaaataatttttcgcgccatgagtgtccgttaccatacgcaaactcactcacacctcgttttactacaactaccaaatcacatct |
5063058 |
T |
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| Q |
114 |
ccaccgttcatttccaatcaccactttaaatccaacagttttaactctctcaatacacgacacttccacaacataacaatcacgtgatcataaccatgag |
213 |
Q |
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| T |
5063059 |
ccaccgttcatttccaatcaccaccttaaatccaacagttttaactctctcaatacacgacacttccacaacataacaatcacgtgatcataaccatgag |
5063158 |
T |
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| Q |
214 |
acaaacactgccatgttcccacatcacgagtcaccatccttctattaatacattttctatatcgcattgtccgtaacatctaactcaactgatcgataga |
313 |
Q |
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| T |
5063159 |
acaaacactgccatgttcccacatcacgagtcaccatccttctattaatacattttctatatcgcattgtccgtaacatctaactcaactgatcgatata |
5063258 |
T |
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| Q |
314 |
taaacgttgatattgttatgtttgacacttttatttgagttcgttgaaactcgat |
368 |
Q |
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| T |
5063259 |
taaacgttgatattgttatgtttgacacttttcttcgagttcgttgaaactcgat |
5063313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 428 - 562
Target Start/End: Original strand, 5063371 - 5063506
Alignment:
| Q |
428 |
ctcaacttcacttctctcgaggcaagaagctagatttatcaaaagggttttcttcatttcatttattagcttttccaaaagcttagaacagaagatccca |
527 |
Q |
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| T |
5063371 |
ctcaacttcacttctctcgaggcaagaagctagatttatcaaaagggttttcttgatttcatttattagcttttccaaaagcttagaacagaagatccca |
5063470 |
T |
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| Q |
528 |
ctacaaaagtttcaaac-ttttttgtttcatggaac |
562 |
Q |
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| T |
5063471 |
ctaaaaaagtttcaaactttttttgtttcatggaac |
5063506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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