View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_low_4 (Length: 532)
Name: NF16407_low_4
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 43018076 - 43017563
Alignment:
| Q |
19 |
ggaattactcactactatattttcctaaagtattggttacgtgaaacataggaaacatattttcttatatcccttccactcattactatattttcctata |
118 |
Q |
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| T |
43018076 |
ggaattactcactactatattttcctaaagtattggttacgtgaaacataggaaacatattttcttatatcccttccactcattactatattttcctata |
43017977 |
T |
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| Q |
119 |
ttcccgaccaatctactatcggaattactcactactatatatattttcctaaagtattggtcacgtgaaacatgcatacacaaaccatgtgtattagaga |
218 |
Q |
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| T |
43017976 |
ttcccgaccaatctactatcggaattactcactactatatatattttcctaaagtattggtcacgtgaaacatgcatacacaaaccatgtgtattagaga |
43017877 |
T |
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| Q |
219 |
atatgaatgtgacaaaataatctattatgattttctttttagtataaaaaataatctattatgaattataggccgnnnnnnntgaaatattctgtttgga |
318 |
Q |
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| T |
43017876 |
atatgaatgtgacaaaataatctattatgattttctttttagtataaaaaataatctattatgaattataggccaaaaaaaatgaaatattctgtttgga |
43017777 |
T |
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| Q |
319 |
attatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaaggctatccaaaaataa |
418 |
Q |
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| T |
43017776 |
attatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaaggctatccaaaaataa |
43017677 |
T |
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| Q |
419 |
ttttctttaacgtttaatttttccaaaaatttacaggacttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaa |
518 |
Q |
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| T |
43017676 |
ttttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaa |
43017577 |
T |
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| Q |
519 |
tttttcataaaata |
532 |
Q |
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| T |
43017576 |
tttttcataaaata |
43017563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 266 - 532
Target Start/End: Complemental strand, 35057706 - 35057456
Alignment:
| Q |
266 |
aaaataatctattatgaattataggccgnnnnnnntgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaat |
365 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||||| |||| | |
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| T |
35057706 |
aaaataatctattatgaattataggccgaaaaaaatgaaatattatatctggaattatagcacaaagttctgtttttactatgatcttaatgtcgtgatt |
35057607 |
T |
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| Q |
366 |
ttagagttattttatttcaaaagttaata-aaaatcaaggctatccaaaaataattttctttaacgtttaatttttccaaaaatttacaggacttgcctt |
464 |
Q |
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| T |
35057606 |
ttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaa-----------------tgaagtttcccaaaatttactgaccttgcctt |
35057524 |
T |
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| Q |
465 |
atttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttcataaaata |
532 |
Q |
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| T |
35057523 |
atttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttttcataaaata |
35057456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 43018087 - 43018028
Alignment:
| Q |
127 |
caatctactatcggaattactcactactatatatattttcctaaagtattggtcacgtgaaacat |
191 |
Q |
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| T |
43018087 |
caatctact-tcggaattactcactact----atattttcctaaagtattggttacgtgaaacat |
43018028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 43018169 - 43018118
Alignment:
| Q |
77 |
attttcttatatcccttccactcattactatattttcctatattcccgacca |
128 |
Q |
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| T |
43018169 |
attttcttatatcccctccactcacttctatattttcctatattccctacca |
43018118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 38569809 - 38569757
Alignment:
| Q |
365 |
tttagagttattttatttcaaaagttaat-aaaaatcaaggctatccaaaaat |
416 |
Q |
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| T |
38569809 |
tttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaat |
38569757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 14328919 - 14328987
Alignment:
| Q |
457 |
cttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
525 |
Q |
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| T |
14328919 |
cttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14328987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 14421929 - 14421997
Alignment:
| Q |
457 |
cttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
525 |
Q |
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| T |
14421929 |
cttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14421997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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