View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_low_5 (Length: 502)
Name: NF16407_low_5
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 52320204 - 52319733
Alignment:
| Q |
11 |
gagtagcataggtttctgttgaagaacaaaacggtatatagtttgttgcaaaagctttcctatatggcattatgttaatatgcagaaaagaacattgatg |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52320204 |
gagtaacataggtttctgttgaagaacaaaacggtatatagtttgttgcaaaagctttcctatatggcattatgttaatatgcagaaaagaacactgatg |
52320105 |
T |
|
| Q |
111 |
cttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatctttgttttcatgcctttttaagaaactaaaacacatcacattt |
210 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52320104 |
cttgctagtttggtgcatacagcaaaacagaacgtgttcaacttctgttctattatcttttttttcatgcctttttaagaaactaaaacacatcacattt |
52320005 |
T |
|
| Q |
211 |
tttatctcaaatctagttctgttctattttgaaatgcacaaaatatataacagaacagatattatgtttcatcttgttctaaagtcttactaaatgcttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52320004 |
tttatctcaaatctagttctgttctattttgaaatgcacaaaatatataacagaacagatattatgtttcatcttgttctaaagtcttactaaatgcgtg |
52319905 |
T |
|
| Q |
311 |
tgtaaatacttctgatatgtgatatcctgaagagaattgttgtgcatttgtatcgtactaagtccagcgagaaaattgtttatttatctttagtcacggc |
410 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
52319904 |
tgtaaatacttctgattcgtgatatcctgaagagaattgttgtgcatttgtatcgtac-aagtccagcgagaaaactgtttatttatctttagtcacggc |
52319806 |
T |
|
| Q |
411 |
ttagtcaagcacttgtttaatgggcgtgtatcggatgggtgtttatgttaggcgttctaccataagtaataagt |
484 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
52319805 |
ttagtcaagcacttgtttaatgagcgtgtatcggatgggtgtttatgtta-gtgttctaccataagtaataagt |
52319733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 17195469 - 17195596
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
17195469 |
tatatggcatcatgttaatatgcaggaaagaacact-atacttgctagtttggtgcatagaacaaaacagaacgtgttcaacttc-gatctattatcttt |
17195566 |
T |
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| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
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||||| || ||||||||||||||||||| |
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| T |
17195567 |
tgtttcaggcatttttaagaaactaaaaca |
17195596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 54515246 - 54515375
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaa-cattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatctt |
169 |
Q |
| |
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||||||||||||||||||||||||||||| || || | || ||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
54515246 |
tatatggcattatgttaatatgcagaaaaaaaacact-atacttgctagtttggtgtatagaacaaaacagaacgtgttcaatttttgttctattatctt |
54515344 |
T |
|
| Q |
170 |
tgttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
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| ||||| | |||||||||||||||||||| |
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| T |
54515345 |
ttgtttcaggtctttttaagaaactaaaaca |
54515375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 19080511 - 19080639
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
19080511 |
tatatggcattatgttaatatgcagaaaagaacact-atacttgctagtttggtgcatagaacaaaacagaacgtgttcaacttctattctattatcttt |
19080609 |
T |
|
| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
19080610 |
tgtttcaggcctttttaagaaactaaaaca |
19080639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 2483061 - 2482933
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| | || ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
2483061 |
tatatgacattatgttaataagcagaaaagaacact-atacttgctagtttggtgcatagaagaaaacaaaacgtgttcaacttctgttctattatcttt |
2482963 |
T |
|
| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
2482962 |
tgtttcaggcctttttaagaaactaaaaca |
2482933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 6582802 - 6582929
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| || || ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
6582802 |
tatatggcattatgttaatatgccgaaa-gaacgtt-atacttgctagtatggtgcatagaacaaaacagaacgtgttcaacttctgttatattatcttt |
6582899 |
T |
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| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
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||||| |||||||||||||||||||||| |
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|
| T |
6582900 |
tgtttcaagcctttttaagaaactaaaaca |
6582929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 36150001 - 36149874
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || || |||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
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| T |
36150001 |
tatatggcattatgttaatatgcagaaa-gaacgtt-atacttgctagcttggtgcatagaacaatacagaacgtgttcaacttctgttatattatcttt |
36149904 |
T |
|
| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||| |
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|
| T |
36149903 |
tgtttcaagcctttttaagaaactaaaaca |
36149874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 44531510 - 44531637
Alignment:
| Q |
71 |
tatatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatcttt |
170 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
44531510 |
tatatggcattatgttaatattcagaaa-gaacatt-atacttgctagtttggtgcatataacaaaacagaacgtgttcaacttctgttatattatcttt |
44531607 |
T |
|
| Q |
171 |
gttttcatgcctttttaagaaactaaaaca |
200 |
Q |
| |
|
||||| || ||||||||||||||||||| |
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|
| T |
44531608 |
tgtttcaagcttttttaagaaactaaaaca |
44531637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 20651062 - 20651177
Alignment:
| Q |
72 |
atatggcattatgttaatatgcagaaaagaacattgatgcttgctagtttggtgcatagagcaaaacagaacgtgttcaacttctgttctattatctttg |
171 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
20651062 |
atatggcattatgttaataagcagaaaagaaaact-atccttgctagtttggtgcatagaacaaaacataacgtgttcaacttctgttctattatctttt |
20651160 |
T |
|
| Q |
172 |
ttttcatgcctttttaa |
188 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
20651161 |
gtttcagacctttttaa |
20651177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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