View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16407_low_6 (Length: 493)
Name: NF16407_low_6
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16407_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 39918491 - 39918969
Alignment:
| Q |
1 |
tcttacatggctactgaaaacgacaacgttgcatcagttaaacttttcaccgacaaatgcggttactcaaagttccgtacaccgtcaatccttgttaacc |
100 |
Q |
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| T |
39918491 |
tcttacatggctactgaaaacgataacgttgcatcagttaaacttttcaccgacaaatgcggttactcaaagttccgtacaccgtcaatccttgttaacc |
39918590 |
T |
|
| Q |
101 |
ccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacaccaaacgacgctgaaacactttaccgttacaaattctccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39918591 |
ccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacaccaaacgacgctgaaacactttaccgttacaaattctccac |
39918690 |
T |
|
| Q |
201 |
cactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaaccttcttagccgttccaagagacggaaaatatggggccgga |
300 |
Q |
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| T |
39918691 |
cactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaaccttcttagccattccaagagacggaaaatatggggccgga |
39918790 |
T |
|
| Q |
301 |
tcatataattggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttagtaagtgtttggaactgcaaagacgtgtttacccttgaag |
400 |
Q |
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| T |
39918791 |
tcagataactggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttagtaagtgtttggaactgcaaagacgtgtttacccttgaag |
39918890 |
T |
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| Q |
401 |
taaaaggcgcatcgcgcctgagacgtgtgttagcaaaaacaactcgactgatagacaaggctttaccttggttaaaatt |
479 |
Q |
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| T |
39918891 |
taaaaggcgcatcgcgcgtgagacgtgtgttagcaaaaacaactcgactgatagacaaggctttaccttggttaaaatt |
39918969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 5545517 - 5545448
Alignment:
| Q |
37 |
gttaaacttttcaccgacaaatgcggttactcaaagttccgtacaccgtcaatccttgttaaccccgttt |
106 |
Q |
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|||||||| ||||| || ||||||||||| |||||||||||||||||||||| || || |||||||||| |
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| T |
5545517 |
gttaaactcttcactgaaaaatgcggttatacaaagttccgtacaccgtcaattctcgtcaaccccgttt |
5545448 |
T |
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