View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16407_low_9 (Length: 368)

Name: NF16407_low_9
Description: NF16407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16407_low_9
NF16407_low_9
[»] chr7 (2 HSPs)
chr7 (85-340)||(31013866-31014121)
chr7 (55-84)||(31014194-31014223)
[»] chr3 (8 HSPs)
chr3 (137-346)||(53059154-53059363)
chr3 (137-346)||(53340767-53340979)
chr3 (137-233)||(53068493-53068589)
chr3 (137-232)||(37418534-37418629)
chr3 (262-351)||(53068080-53068169)
chr3 (18-55)||(37418896-37418933)
chr3 (18-55)||(53059591-53059628)
chr3 (308-341)||(53062344-53062377)
[»] chr4 (1 HSPs)
chr4 (18-55)||(34036037-34036074)
[»] chr2 (1 HSPs)
chr2 (18-55)||(6687807-6687844)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 85 - 340
Target Start/End: Complemental strand, 31014121 - 31013866
Alignment:
Q  85 ttgaggaatgtgttcgccgattactagctgctttaatttgagaaaagtaagcgtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatg 184  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014121 ttgaggaatgtgttcgcggattactagctgttttaatttgagaaaagtaagcgtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatg 31014022  T
Q  185 ttaagttcaagggtttcagttcgtctttatattgctgcaataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgatt 284  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014021 ttaagttcaagggtttcagttcatctttgtattgctgcgataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgatt 31013922  T
Q  285 gtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaaga 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013921 gtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaaga 31013866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 31014223 - 31014194
Alignment:
Q  55 tttcaattcctctagaatgggaaaggacaa 84  Q
    ||||||||||||||||||||||||||||||    
T  31014223 tttcaattcctctagaatgggaaaggacaa 31014194  T

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Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 137 - 346
Target Start/End: Complemental strand, 53059363 - 53059154
Alignment:
Q  137 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagttggg 236  Q
    |||||||| |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||    
T  53059363 gtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttgg 53059264  T
Q  237 ttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagca 336  Q
    ||||  | ||||||| | ||||||||||| ||||||||||||||||| |||||||||| ||||| |  |  |||||||||| |||||||||||||| |||    
T  53059263 ttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgca 53059164  T
Q  337 aagagtggtt 346  Q
    ||||||||||    
T  53059163 aagagtggtt 53059154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 346
Target Start/End: Original strand, 53340767 - 53340979
Alignment:
Q  137 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagttggg 236  Q
    |||||||| |||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  53340767 gtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatggctgcaataataagttggg 53340866  T
Q  237 ttataaccttgggtttg---catgcagcacaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgaca 333  Q
    | | |   ||||||| |    ||  |  |||| |||||| |||||||||| |||||||||| ||||| | ||| ||||||| ||||||||||| |||||     
T  53340867 tgaaattgttgggttcgtccaatctaaaacaacatttgaggcggaatgatagtattggcagtgtgttgtcgcacgatagcaagactgagtaaatatgact 53340966  T
Q  334 gcaaagagtggtt 346  Q
    ||||| |||||||    
T  53340967 gcaaatagtggtt 53340979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 53068589 - 53068493
Alignment:
Q  137 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagtt 233  Q
    |||||||| |||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  53068589 gtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtt 53068493  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 37418629 - 37418534
Alignment:
Q  137 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagt 232  Q
    ||||||||||||||| |||||||||||||||||| || |||  ||||  | |||||||||||||||||| |||||| |||||||||||||||||||    
T  37418629 gtgaatattttggaagctaatttcatgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgcaataataagt 37418534  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 53068169 - 53068080
Alignment:
Q  262 acaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagagtggttgtttt 351  Q
    |||| ||||||||||||||||| |||||||  | ||||| | ||  ||||||||||||||||||||   || ||||| ||||||||||||    
T  53068169 acaacatttgaagcggaatgatcgtattggatgtgtgttgtcgcgcgatagcatgactgagtaaaccatactgcaaatagtggttgtttt 53068080  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 37418933 - 37418896
Alignment:
Q  18 cttggctgtcaccaaattgggcaagcaattgagcttgt 55  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  37418933 cttggctgtcaccaaattgggcaagcatttgatcttgt 37418896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 53059628 - 53059591
Alignment:
Q  18 cttggctgtcaccaaattgggcaagcaattgagcttgt 55  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  53059628 cttggctgtcaccaaattgggcaagcatttgatcttgt 53059591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 53062377 - 53062344
Alignment:
Q  308 gatagcatgactgagtaaacatgacagcaaagag 341  Q
    ||||||||||||||||||||||||| ||||||||    
T  53062377 gatagcatgactgagtaaacatgactgcaaagag 53062344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 34036074 - 34036037
Alignment:
Q  18 cttggctgtcaccaaattgggcaagcaattgagcttgt 55  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  34036074 cttggctgtcaccaaattgggcaagcatttgatcttgt 34036037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 6687844 - 6687807
Alignment:
Q  18 cttggctgtcaccaaattgggcaagcaattgagcttgt 55  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  6687844 cttggctgtcaccaaattgggcaagcatttgatcttgt 6687807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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