View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16408_high_10 (Length: 260)
Name: NF16408_high_10
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15815911 - 15815673
Alignment:
| Q |
1 |
aacttttctgttaacatacatatatgtctccctactatttttgaaaatagttgaaagtaaaaacttaaccataaacatgtcacaaatgaacatgacttgt |
100 |
Q |
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| T |
15815911 |
aacttttctgttaacatacatatatgtctccctactgttttgggaaatagttgaaagtaaaaacttaaccataaacatgtcacaaatgaacatgacttgt |
15815812 |
T |
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| Q |
101 |
actacaaggtttctaagcttc------------atttttctcttcaccttaacaaatgcacaatcaccatattacatgttaaatttttgccagaattcaa |
188 |
Q |
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| T |
15815811 |
actgcaaggtttctaagcttcattctacttcatatttttctcttcaccttaacaaatgcacaatcaccatattacaggttaaatttttgccagaattcaa |
15815712 |
T |
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| Q |
189 |
cagaaaaaacaaacaacacatcataccgatccaacgtta |
227 |
Q |
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| T |
15815711 |
cagaaaaaacaaacaacacatcataccgatccaacgtta |
15815673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 15802270 - 15802180
Alignment:
| Q |
138 |
taacaaatgcacaatcaccatattacatgttaaatttttgccagaattcaacagaaaaaacaaacaacacatcataccgatccaacgttaa |
228 |
Q |
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| T |
15802270 |
taacaactgcacaatcaccattttacttgtacagtatttgcgagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaa |
15802180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 15802334 - 15802297
Alignment:
| Q |
89 |
aacatgacttgtactacaaggtttctaagcttcatttt |
126 |
Q |
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| T |
15802334 |
aacatgacttgtactacaaggtttctaagcttcatttt |
15802297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 15807889 - 15807798
Alignment:
| Q |
138 |
taacaaatgcacaatcaccatattacatgttaaatttttgccagaattcaacagaaaaaacaaacaacacatcataccgatccaacgttaac |
229 |
Q |
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| T |
15807889 |
taacgaatgcgcaatcaccattttacatgtacagttattgccagaattctactgaaaaaacagtcaacacttcatatcaatccaacgttaac |
15807798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 15807953 - 15807918
Alignment:
| Q |
89 |
aacatgacttgtactacaaggtttctaagcttcatt |
124 |
Q |
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| T |
15807953 |
aacatgacttgtactacaaggtttctaagcttcatt |
15807918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 15794535 - 15794500
Alignment:
| Q |
89 |
aacatgacttgtactacaaggtttctaagcttcatt |
124 |
Q |
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| T |
15794535 |
aacatgacttatactacaaggtttctaagcttcatt |
15794500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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