View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16408_high_11 (Length: 255)
Name: NF16408_high_11
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7481568 - 7481799
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7481568 |
gagagatgatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatcaagttcaa |
7481667 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7481668 |
ctctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgacaagtcatgaccagtaaca |
7481767 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |
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|
| T |
7481768 |
agaaggctaaaaagttttacatcttcttctca |
7481799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 7722844 - 7722613
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7722844 |
gagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatcaagttcaa |
7722745 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
7722744 |
ctctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgaccagtaaca |
7722645 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |
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|
| T |
7722644 |
agaaggctaaaaagttttgcatcttcttctca |
7722613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 7129570 - 7129339
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7129570 |
gagagatgatcttcaaaagctggtggaaaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
7129471 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
| |
|
|||||| | ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
7129470 |
ctctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatcaca |
7129371 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||| |
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|
| T |
7129370 |
agaaggctaaaaaggttcgcatcttcttctca |
7129339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7493970 - 7494201
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
7493970 |
gagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatcaagttcaa |
7494069 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
| |
|
|| ||| | ||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
7494070 |
ctgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgacaggtgatgaccagtaaca |
7494169 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
7494170 |
agaaggctaaaaagtttcacatcttcttctca |
7494201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7519637 - 7519868
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
7519637 |
gagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatcaagttcaa |
7519736 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
| |
|
|| ||| | ||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7519737 |
ctgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagtgatgacctgtaaca |
7519836 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
7519837 |
agaaggctaaaaagtttcacatcttcttctca |
7519868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7527687 - 7527918
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
7527687 |
gagagatgatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaagagcagcagggcaccaacaaccatcaagttcaa |
7527786 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||| | ||| |
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|
| T |
7527787 |
ctatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgacaagtgatgaccaatcaca |
7527886 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
|||| ||||||||| | | ||||||| ||||| |
|
|
| T |
7527887 |
agaaagctaaaaaggtccgcatcttcttctca |
7527918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 7714550 - 7714326
Alignment:
| Q |
18 |
gagagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaa |
117 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
7714550 |
gagagatgatcttgacaagatggtggataatatgtatgagatcaaggctgtgattttggat-------agcagcagggagccaacaaccatgaagttcaa |
7714458 |
T |
|
| Q |
118 |
ctctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaaca |
217 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| ||||||| |||||||| ||| || |||||||||| |||||| ||||| ||||||||||||||| | ||| |
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|
| T |
7714457 |
ctatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgacaagtgatgaccaatcaca |
7714358 |
T |
|
| Q |
218 |
agaaggctaaaaagtttcacatcttcatctca |
249 |
Q |
| |
|
|||| ||||||||| || ||||||| ||||| |
|
|
| T |
7714357 |
agaaagctaaaaaggtttgcatcttcttctca |
7714326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 7506351 - 7506465
Alignment:
| Q |
135 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7506351 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
7506450 |
T |
|
| Q |
235 |
cacatcttcatctca |
249 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
7506451 |
cacatcttcttctca |
7506465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 7506280 - 7506352
Alignment:
| Q |
20 |
gagaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
92 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7506280 |
gagaagatcttgactagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
7506352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 16750836 - 16750712
Alignment:
| Q |
52 |
tctgagatcaaggctgtggttttggatgcagaggagca---gcagggagccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttg |
148 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || |||||| |||||||| || | || |||| ||| | || || ||||||||| |||||| |
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|
| T |
16750836 |
tctgagatcaaggctgcggttttggatgcagaagaacaacagcagggccccaacaactatagaattaaactatgggtggagaagctcaaagatactcttg |
16750737 |
T |
|
| Q |
149 |
atgatgctgatgacttgctcgatga |
173 |
Q |
| |
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||||||||||||||||||| ||||| |
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|
| T |
16750736 |
atgatgctgatgacttgcttgatga |
16750712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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