View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16408_high_2 (Length: 541)
Name: NF16408_high_2
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Original strand, 9385901 - 9386413
Alignment:
| Q |
13 |
tcatcacatctgtaaactgaggcaattatacgtaccacacttttcggttgtttggtatacataatgacagaatcgcttatcacattgaacttctccacta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9385901 |
tcatcacatctgtaaactgaggcaattatacgtaccacatttttcggttgtttggtatacataatgacagaatcgcttatcacattgaacttctccacta |
9386000 |
T |
|
| Q |
113 |
tcttcatcaacaacctcacaacttgtctcctttccacatctatcttcacaaatcacaggcaaccatgaaagctcaaatccatcaattatgatcccatgaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9386001 |
tcttcatcaacaacctcacaacttgtctcctttccacatctatcttcacaaatcacaggcaaccatgaaagctcaaatccatcaattatcatcccatgaa |
9386100 |
T |
|
| Q |
213 |
tcacatcataagaaatcttctctttcacttcaatattcaacaatggcctacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaact |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9386101 |
tcacatcataagaaatcttctctttcacttcaatcttcaacaatggcctacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaact |
9386200 |
T |
|
| Q |
313 |
atacctggagaatgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcgtgtccacgttaacatac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9386201 |
atacctggagaatgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcatgtccacgttaacatac |
9386300 |
T |
|
| Q |
413 |
gtatgatctttaattggattagaacaattgaaatacgctacctgcgtttgatcccgaaaacgaaacgagtacggctcaaacacaaaatctgctttgttga |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9386301 |
atatgatctttaattggattagaacaattgaaatacgctacctgcgtttgatcccgaaaacgcaacgagtacggctcaaacacaaaatctgctttgttga |
9386400 |
T |
|
| Q |
513 |
aggaaagggaatt |
525 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9386401 |
aggaaagggaatt |
9386413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 40 - 452
Target Start/End: Complemental strand, 9232705 - 9232302
Alignment:
| Q |
40 |
atacgtaccacacttttcggttgtttggtatacataatgacagaatcgcttatcacattgaacttctccactatcttcatcaacaacctcacaacttgtc |
139 |
Q |
| |
|
|||| |||| ||||| || ||||||||||| |||||||||| || |||||| ||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
9232705 |
atacataccgcacttatcagttgtttggtaagcataatgacataactgcttattacattgaacttctcctttttcttcatcaacaaccttacaacttgtt |
9232606 |
T |
|
| Q |
140 |
tcctttccacatctatcttcacaaatcacaggcaaccatgaaagctcaaatccatcaattatgatcccatgaatcacatcataagaaatcttctctttca |
239 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| ||||| |||||||| ||| |||||||||||| ||||||||| || |||||||||| |
|
|
| T |
9232605 |
ccctttccacatctatcttcacagattacaggcaaccatgaaacctcaactccatcaactatcatcccatgaatctcatcataagtaacattctctttca |
9232506 |
T |
|
| Q |
240 |
cttcaatattcaacaatggcctacccaacgtagccaccataaaatcacacccaaccttaatatccccaaaactatacctggagaatgatgatgattgttc |
339 |
Q |
| |
|
|| | | | || | ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||| | ||||||| |||| |
|
|
| T |
9232505 |
---cagtctctgattgtgccttacccaatgtagccaccataaaatcacacccaaccttaatatcctcaacacgatactcaaacaatgatg------gttc |
9232415 |
T |
|
| Q |
340 |
caaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcgtgtccacgttaacatacgtatgatctttaattggattagaacaa |
439 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| || |||||| ||||||||||| ||||| ||| ||||||| |||||| | |||||| |
|
|
| T |
9232414 |
caaaacagaatacacatgattagtactactattcccatgtctgctacaacgactcgtgtccaccttaacgtaccgtggatcttttattggacttgaacaa |
9232315 |
T |
|
| Q |
440 |
ttgaaatacgcta |
452 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9232314 |
ttgaaatacgcta |
9232302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University