View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16408_high_4 (Length: 436)
Name: NF16408_high_4
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 28966226 - 28965819
Alignment:
| Q |
18 |
agttacttggttatagaaaactggtacgaagtttcgttcaaaagtccattctggttaggagagctgtattattatacccctttttaggctttagctagct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28966226 |
agttacttggttatagaaaactggtacgaagtttcgttcaaaagtccattctggttaggagagctgtattattatacccctttttaggctttagctagct |
28966127 |
T |
|
| Q |
118 |
ttacattgaaacctatgagacagttctggattcgaatacttatatcggttccttcacttgcaccctagtttagtttcatctatatttggactgttggtaa |
217 |
Q |
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| T |
28966126 |
ttacattgaaacctatgagacagttctgggttcgaatacttatatcggttccttcacttgcaccctagtttagtttcatctatatttggactgttggtaa |
28966027 |
T |
|
| Q |
218 |
tgttccatttctacatctgatttgatatttaatccttttatccactcatttatgctttaagtcatgaacttggttctcggggtgcaaccgaagtcctggt |
317 |
Q |
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| T |
28966026 |
tgttccatttctacatctgatttgatatttaatccttttatccactcatttatgctttaagtcatgaacttggttctcggggtgcaaccgaagtcctggt |
28965927 |
T |
|
| Q |
318 |
agtctactagatctggtttctggcgtgaacatagtagttagcaaacaaaaaccccatgtcaaaaccttttttcttttgaaaattatcccattctgaagtt |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28965926 |
agtatactagatctggtttctggcgtgaacatagtagttagcaaacaaaaaccccatgtcaaaaccttttttcatttgaaaattatcccattctgaagtt |
28965827 |
T |
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| Q |
418 |
gagccttt |
425 |
Q |
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| T |
28965826 |
gagccttt |
28965819 |
T |
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