View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16408_high_5 (Length: 431)

Name: NF16408_high_5
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16408_high_5
NF16408_high_5
[»] chr4 (12 HSPs)
chr4 (159-336)||(21228389-21228566)
chr4 (21-148)||(7885275-7885402)
chr4 (335-423)||(21228591-21228679)
chr4 (187-336)||(7884922-7885071)
chr4 (23-126)||(4320525-4320628)
chr4 (23-109)||(6753032-6753118)
chr4 (23-108)||(6651139-6651224)
chr4 (23-102)||(4123869-4123948)
chr4 (20-126)||(4344715-4344821)
chr4 (23-109)||(6545371-6545457)
chr4 (54-109)||(6758827-6758882)
chr4 (20-126)||(4361146-4361252)
[»] chr7 (3 HSPs)
chr7 (37-148)||(18935472-18935583)
chr7 (44-148)||(34724470-34724574)
chr7 (250-336)||(34724090-34724176)
[»] chr6 (6 HSPs)
chr6 (20-102)||(5344930-5345012)
chr6 (20-100)||(5102546-5102626)
chr6 (37-108)||(5243837-5243908)
chr6 (41-126)||(5096798-5096883)
chr6 (37-102)||(5073838-5073903)
chr6 (62-102)||(5354544-5354584)
[»] scaffold0813 (1 HSPs)
scaffold0813 (23-108)||(4750-4835)
[»] chr8 (1 HSPs)
chr8 (18-102)||(31175914-31175998)
[»] chr5 (3 HSPs)
chr5 (48-103)||(8877706-8877761)
chr5 (18-102)||(20812344-20812428)
chr5 (18-102)||(20838699-20838783)
[»] chr3 (1 HSPs)
chr3 (38-102)||(32411133-32411197)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 159 - 336
Target Start/End: Original strand, 21228389 - 21228566
Alignment:
Q  159 ctcaattgaatcaaactgtggcaagtatttgtgagggattctcaaatatcgggacttcgacatcaattgattgtcacagtcaagtttgtatttcaagctc 258  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21228389 ctcaattgaatcaaactgtagcaagtatttgtgagggattctcaaatatcgggacttggacatcaattgattgtcacagtcaagtttgtatttcaagctc 21228488  T
Q  259 aaaaagttccttgacatcccttttgattcaagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt 336  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21228489 aaaaagttccttgacatcccttttgattcaaatgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt 21228566  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 7885402 - 7885275
Alignment:
Q  21 acactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttcc 120  Q
    ||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||| ||| |||||| ||||||||||||||||||    
T  7885402 acactgctatcacaagagtgccctttgcagtagtaagatcaaaaagcattgcatttatttctctatgtggttataaaggatctgcacgtagagtgtttcc 7885303  T
Q  121 ttctattattcagtctttgttgtctcca 148  Q
    ||||||||||||||||| | ||||||||    
T  7885302 ttctattattcagtcttggctgtctcca 7885275  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 21228591 - 21228679
Alignment:
Q  335 ttacatgtccaaacacaaacctctctatgtttgtttgtttatatatcaaacatctattgttaaaatcaagtaatctgataaagtattat 423  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21228591 ttacttgtccaaacacaaacctcactatgtttgtttgtttatatatcaaacatctatagttaaaatcaagtaatctgataaagtattat 21228679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 7885071 - 7884922
Alignment:
Q  187 ttgtgagggattctcaaatatcgggacttcgacatcaattgattgtcacagtcaagtttgtatttcaagctcaaaaagttccttgacatcccttttgatt 286  Q
    ||||||||||||||||||||| | ||||||  |||||| |  | ||| || ||||||||||||||| |||||||||| |||  | || ||||||||||||    
T  7885071 ttgtgagggattctcaaatattgagacttcagcatcaaattttcgtcgcactcaagtttgtatttccagctcaaaaaattcagtaacttcccttttgatt 7884972  T
Q  287 caagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt 336  Q
     || ||||| |||||||||||||| | |||||||||| ||||||||||||    
T  7884971 gaaatgggagtgagctgcgatgtcgcaaacattcttagagaaaatatttt 7884922  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 4320628 - 4320525
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttcctt 122  Q
    |||| ||| ||| |||| |||||| |||||||||| | ||||||||||| || ||||||||| ||||| |||||||||||  |||||   ||||||||||    
T  4320628 actggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 4320529  T
Q  123 ctat 126  Q
    ||||    
T  4320528 ctat 4320525  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 6753032 - 6753118
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgt 109  Q
    |||||||| ||| ||||||||||| || |||||||||  |||||||||| |||||||||| |  |||||| |||||||||| |||||    
T  6753032 actgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgt 6753118  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 6651139 - 6651224
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacg 108  Q
    |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| |||||||||| ||||    
T  6651139 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacg 6651224  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 4123948 - 4123869
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||||||| ||| ||||||||||| |  ||||||| | ||||||||||| || ||||||||| ||||| |||||||||||    
T  4123948 actgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggatt 4123869  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 4344715 - 4344821
Alignment:
Q  20 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttc 119  Q
    ||||||||||| ||| |||| |||||| || ||||||| | |||| |||||| || ||||||| | ||||| |||||||||||  |||||   |||||||    
T  4344715 aacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttc 4344814  T
Q  120 cttctat 126  Q
    |||||||    
T  4344815 cttctat 4344821  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6545457 - 6545371
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgt 109  Q
    |||||||| ||| ||||||||||| || |||| ||||  |||||||||| |||||||||| |  |||||| |||||||||| |||||    
T  6545457 actgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgt 6545371  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 6758827 - 6758882
Alignment:
Q  54 taagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgt 109  Q
    |||||| ||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  6758827 taagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgt 6758882  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 4361146 - 4361252
Alignment:
Q  20 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttc 119  Q
    ||||||| ||| ||| |||| |||||| || | ||||||| |||| |||||| || ||||||| | ||||| |||||||||||  |||||   |||||||    
T  4361146 aacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttc 4361245  T
Q  120 cttctat 126  Q
    |||||||    
T  4361246 cttctat 4361252  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 18935472 - 18935583
Alignment:
Q  37 agtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctattattcagtct 136  Q
    ||||||||||||| ||||||||| ||||||||||| || |||||| || ||||| | ||||||||| |||||||  ||||||||||| ||||||||||||    
T  18935472 agtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtct 18935571  T
Q  137 ttgttgtctcca 148  Q
    | | ||||||||    
T  18935572 tggatgtctcca 18935583  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 34724574 - 34724470
Alignment:
Q  44 tttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctattattcagtctttgttgt 143  Q
    |||||| ||||||||| ||||||||||| || |||||| || ||||| | |||||||||||||||||  ||||| ||||| ||||||||||||| | |||    
T  34724574 tttgcagtagtaagatcaaaaagcattggatttatttcactttgtggatttgaaggatttgcacgtaatgtgttcccttcaattattcagtcttggatgt 34724475  T
Q  144 ctcca 148  Q
    |||||    
T  34724474 ctcca 34724470  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 34724176 - 34724090
Alignment:
Q  250 ttcaagctcaaaaagttccttgacatcccttttgattcaagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt 336  Q
    |||||||||| ||| |||||||||||| ||||| |||||| | ||||||| ||||  |||||| || | ||||| |||||| |||||    
T  34724176 ttcaagctcacaaaattccttgacatcactttttattcaaattggaatgaactgccgtgtcactaatactcttaaagaaaacatttt 34724090  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 5344930 - 5345012
Alignment:
Q  20 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||||||| || ||| |||| ||||||  | ||||||| | ||||||||||| |||||||||||| |||||||||||||||||    
T  5344930 aacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggatt 5345012  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 5102626 - 5102546
Alignment:
Q  20 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagga 100  Q
    |||||||| || |||  |||||||||| || ||||||| | ||||||||||| |||||| ||||| |||||||||||||||    
T  5102626 aacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaagga 5102546  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 5243908 - 5243837
Alignment:
Q  37 agtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacg 108  Q
    |||||||||| || ||||||| | ||||||||| | |||||||||| | |||||||||||||||||| ||||    
T  5243908 agtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacg 5243837  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 5096798 - 5096883
Alignment:
Q  41 ccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctat 126  Q
    |||||| || ||||||| | ||||||||||| ||| |||||||| |||||| ||||||||||| |||||   |||||||| |||||    
T  5096798 cccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctat 5096883  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 5073903 - 5073838
Alignment:
Q  37 agtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||||||||| || ||||||| |  |||||||||| |||||||||| | || ||||||||||||||    
T  5073903 agtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggatt 5073838  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 5354584 - 5354544
Alignment:
Q  62 aaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||||||||| |||||||||| | |||||||||||||||||    
T  5354584 aaaagcattggatatatttctttatgtggctatgaaggatt 5354544  T

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Target: scaffold0813 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 4835 - 4750
Alignment:
Q  23 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacg 108  Q
    |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| |||||||||| ||||    
T  4835 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacg 4750  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 31175914 - 31175998
Alignment:
Q  18 caaacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||| |||| ||||| | ||||||||| | || ||| ||||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  31175914 caaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggatt 31175998  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 8877706 - 8877761
Alignment:
Q  48 cattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggattt 103  Q
    |||||||||| | ||||||||||| |||||||||| | || |||||||||||||||    
T  8877706 cattagtaaggtcaaaaagcattggatatatttctttgtgcggctatgaaggattt 8877761  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 20812344 - 20812428
Alignment:
Q  18 caaacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||| |||| ||||| | ||||||||| | || ||| ||||| |||||||||||||||||| || || ||||| || ||||||||    
T  20812344 caaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggatt 20812428  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 20838699 - 20838783
Alignment:
Q  18 caaacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    |||| |||| ||||| | ||||||||| | || ||| ||||| ||||||||||| |||||| || || ||||| |||||||||||    
T  20838699 caaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggatt 20838783  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 32411197 - 32411133
Alignment:
Q  38 gtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 102  Q
    ||||||| | || |||||||||  |||||||| |||||||| ||||| ||||| |||||||||||    
T  32411197 gtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 32411133  T

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