View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16408_low_1 (Length: 562)
Name: NF16408_low_1
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 10333394 - 10333921
Alignment:
| Q |
1 |
atgaagtaaacgaaaaataagaaagtgttgatccaaaactattcaggaagcttattggatcactaaggtacgtatctatgtcaaagcaaaccgaatattc |
100 |
Q |
| |
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||||||| || |||||| |||||||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||||||||||| ||||||||||| |
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| T |
10333394 |
atgaagtgaaagaaaaagaagaaagtgttgatccaacactattcatgaagcttattgaatcgctaaggta----tctatgtcaaagcagaccgaatattc |
10333489 |
T |
|
| Q |
101 |
gctattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttagtcgttaaaagaataccgaggtacataaatgggacactaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333490 |
gctattcagttgaaatggtgaccaagttcatgagtaatcatcttaa-------------gtcgttaaaagaataccgaggtacataaatgggacactaca |
10333576 |
T |
|
| Q |
201 |
tcatggcatcgtattttctactggaaaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatatttcaaggagccct |
300 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10333577 |
tcatggcatcctattttctactggagaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatattacaaggagccct |
10333676 |
T |
|
| Q |
301 |
tatttcttggtcatttaagaagtagtcatttgtggctctctcaagttctgaggctgagtatgtgctggaagatctcatgattaagctgaaacagactgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333677 |
tatttcttggtcatttaagaagtagtcatttgtggctctctcaagttctgaggctgagtatgtgctggaagatctcatgattaagctgaaacagactgtc |
10333776 |
T |
|
| Q |
401 |
aaattgttgattgataacaagtcaacaattaaccttgctaagaacccccattgcttatgggaagttgaaacacatcgaaacca-attccactacctaaga |
499 |
Q |
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| T |
10333777 |
aaattgttgattgataacaagtcaacaattaaccttgctaagaacccccattgcttatgggaagttgaaacacatcgaaaccagattccactacctaaga |
10333876 |
T |
|
| Q |
500 |
gaccaggtgaataaatgcaaggtaattgttgtacactgctcaaca |
544 |
Q |
| |
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| T |
10333877 |
gaccaggtgaataaatgcaaggtaattgttgtacactgctcaaca |
10333921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 6371972 - 6371938
Alignment:
| Q |
410 |
attgataacaagtcaacaattaaccttgctaagaa |
444 |
Q |
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| T |
6371972 |
attgataacaagtcaacaattaatcttgctaagaa |
6371938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 14640496 - 14640553
Alignment:
| Q |
103 |
tattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttag |
160 |
Q |
| |
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|||||||||| ||| || | ||||||||||||||| | ||| |||||||||||||||| |
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| T |
14640496 |
tattcagttggaattgttagcaagttcatgagtaaccctctcaaaactcatttcttag |
14640553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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