View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16408_low_10 (Length: 263)

Name: NF16408_low_10
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16408_low_10
NF16408_low_10
[»] chr5 (12 HSPs)
chr5 (9-263)||(41286351-41286605)
chr5 (18-177)||(41316351-41316510)
chr5 (18-187)||(31188371-31188540)
chr5 (21-173)||(41328321-41328473)
chr5 (18-176)||(41310611-41310769)
chr5 (18-176)||(41324420-41324578)
chr5 (19-173)||(41332332-41332486)
chr5 (18-123)||(31225273-31225378)
chr5 (62-170)||(41337304-41337412)
chr5 (18-111)||(31178402-31178495)
chr5 (18-176)||(41366511-41366666)
chr5 (192-259)||(4209918-4209986)
[»] chr4 (1 HSPs)
chr4 (64-176)||(17249070-17249182)
[»] chr3 (2 HSPs)
chr3 (192-263)||(31311326-31311398)
chr3 (197-257)||(55378742-55378803)
[»] chr6 (2 HSPs)
chr6 (194-259)||(2401804-2401870)
chr6 (196-259)||(17545311-17545375)
[»] chr2 (1 HSPs)
chr2 (194-259)||(27277547-27277613)
[»] chr7 (1 HSPs)
chr7 (199-259)||(42424577-42424638)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 41286351 - 41286605
Alignment:
Q  9 agaccaaacttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacagg 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41286351 agaccaaacttgccagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacagg 41286450  T
Q  109 aaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 208  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286451 aaagtgagcactcataacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 41286550  T
Q  209 gtttttgatcccctaaatatacatactattgattttagtccccctaaaattctcc 263  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41286551 gcttttgatcccctaaatatacatactattgattttagtcctcctaaaattctcc 41286605  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 41316351 - 41316510
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    |||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | |    
T  41316351 ttgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatc 41316450  T
Q  118 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 177  Q
    ||||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316451 actcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 31188540 - 31188371
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    |||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| |    
T  31188540 ttgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatc 31188441  T
Q  118 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 187  Q
    |||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188440 actcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  21 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 120  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  121 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 173  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 41310611 - 41310769
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    |||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | |    
T  41310611 ttgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatc 41310710  T
Q  118 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 176  Q
    ||||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310711 actcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 41324420 - 41324578
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | |    
T  41324420 ttgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatc 41324519  T
Q  118 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 176  Q
    ||||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324520 actcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  19 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 118  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  119 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 173  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

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Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 31225273 - 31225378
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    |||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  31225273 ttgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagc 31225372  T
Q  118 actcac 123  Q
    ||||||    
T  31225373 actcac 31225378  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  62 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 161  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  162 caggttagt 170  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 31178495 - 31178402
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 111  Q
    |||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178495 ttgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 41366511 - 41366666
Alignment:
Q  18 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 117  Q
    |||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | ||   | |    
T  41366511 ttgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atc 41366607  T
Q  118 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 176  Q
    ||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366608 actcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 4209918 - 4209986
Alignment:
Q  192 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 259  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||| || ||||||||||| ||||||||    
T  4209918 atttaagggttaaatatatttttgatccctataaatatacaaactttttattttagtccctctaaaatt 4209986  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  64 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 163  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  164 ggttagtctacaa 176  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 31311398 - 31311326
Alignment:
Q  192 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctcc 263  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||| || ||||||||||| ||||||||||||    
T  31311398 attttagggttaaatatgtttttggtccctataaatatacaaacttttcattttagtccctctaaaattctcc 31311326  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 55378742 - 55378803
Alignment:
Q  197 agggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaa 257  Q
    |||||||| |||||||||||||||  |||||||||| ||| || ||||||||||| ||||||    
T  55378742 agggttaaatatgtttttgatccctataaatatacaaacttttcattttagtccctctaaaa 55378803  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 2401804 - 2401870
Alignment:
Q  194 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 259  Q
    |||||||||||||||||||||  ||||| |||||||||  | | |||||||||| ||||||||||||    
T  2401804 tttagggttaattatgttttttgtccccttaaatataccaattgttgattttagcccccctaaaatt 2401870  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 17545375 - 17545311
Alignment:
Q  196 tagggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaatt 259  Q
    ||||||||| |||||||||||||||  |||||||||| ||| ||  |||||||||| ||||||||    
T  17545375 tagggttaaatatgtttttgatccctataaatatacaaactttttgttttagtccctctaaaatt 17545311  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 27277547 - 27277613
Alignment:
Q  194 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 259  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  27277547 tttagggttaaatatgtttttggtccccataaatatacaaacttttcgttttagtccctctaaaatt 27277613  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 42424638 - 42424577
Alignment:
Q  199 ggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 259  Q
    |||||||||| |||||||||||| ||||||||   ||| ||||||||||||| |||||||||    
T  42424638 ggttaattatatttttgatccccctaaatatatcaactgttgattttagtcctcctaaaatt 42424577  T

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