View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16408_low_13 (Length: 238)

Name: NF16408_low_13
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16408_low_13
NF16408_low_13
[»] chr5 (13 HSPs)
chr5 (12-218)||(41286752-41286962)
chr5 (114-222)||(41324755-41324863)
chr5 (114-222)||(41328732-41328840)
chr5 (114-222)||(41332665-41332773)
chr5 (142-222)||(31225598-31225678)
chr5 (153-209)||(31188113-31188169)
chr5 (122-222)||(41337480-41337580)
chr5 (152-209)||(31178050-31178107)
chr5 (114-199)||(41316691-41316776)
chr5 (170-222)||(14235867-14235919)
chr5 (130-222)||(41431922-41432014)
chr5 (114-165)||(41310916-41310967)
chr5 (168-219)||(41366898-41366949)
[»] chr4 (1 HSPs)
chr4 (129-219)||(17248920-17249010)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 41286752 - 41286962
Alignment:
Q  12 aaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaaggg----ggttagatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  41286752 aaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaagggtgtgggttagatga 41286851  T
Q  108 taaattatgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41286852 taaattatgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatccaa 41286951  T
Q  208 aggtgatggaa 218  Q
    |||||||||||    
T  41286952 aggtgatggaa 41286962  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 41324755 - 41324863
Alignment:
Q  114 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 213  Q
    ||||||||||||||  ||||| | |||  |||||||  |||||||||||||  | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  41324755 atgttaatccatttgtaggacatattcgatgctggtaccgaaacatcgtcaacgactgtgttatgggcgatatctgagatggtaaagaatccaaaggtga 41324854  T
Q  214 tggaagaag 222  Q
    |||||||||    
T  41324855 tggaagaag 41324863  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 41328732 - 41328840
Alignment:
Q  114 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 213  Q
    ||||||||||||||  ||||| |||||  |||||||  |||||||||||||  || | ||||||||| ||||||||||||||| ||||| |||||||| |    
T  41328732 atgttaatccatttgtaggacatgttccttgctggtaccgaaacatcgtcacaggttctgttatgggcgatgtctgagatggtgaagaacccaaaggtaa 41328831  T
Q  214 tggaagaag 222  Q
    |||||||||    
T  41328832 tggaagaag 41328840  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 41332665 - 41332773
Alignment:
Q  114 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 213  Q
    ||||||||||||||  ||||  |||||| |||||||  |||||||||||||| ||   ||||||||| ||||||||||||||||||||| ||||||||      
T  41332665 atgttaatccatttgtaggatatgttcattgctggtaccgaaacatcgtcagaggtattgttatgggcgatgtctgagatggtaaagaacccaaaggtat 41332764  T
Q  214 tggaagaag 222  Q
    |||||||||    
T  41332765 tggaagaag 41332773  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 31225598 - 31225678
Alignment:
Q  142 ctgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaag 222  Q
    |||||||| ||||||| || ||||||| ||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||    
T  31225598 ctgctggtagcgaaacgtcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggaggaag 31225678  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 31188169 - 31188113
Alignment:
Q  153 gaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaag 209  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  31188169 gaaacatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaag 31188113  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 41337480 - 41337580
Alignment:
Q  122 ccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaa 221  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||   |||| |||||| |||||| |||||| ||||||| ||||  || |||||||||    
T  41337480 ccatttgcaggacttgttcattgctggcagcgaaacatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaa 41337579  T
Q  222 g 222  Q
    |    
T  41337580 g 41337580  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 31178107 - 31178050
Alignment:
Q  152 cgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaag 209  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||| ||||||| ||||||    
T  31178107 cgaaacatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaag 31178050  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 41316691 - 41316776
Alignment:
Q  114 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaa 199  Q
    |||||||||||||| |||||| ||||   |||||||   ||||||||||||| ||||||| | |||| |||||||| |||||||||    
T  41316691 atgttaatccatttgcaggacatgtttggtgctggtactgaaacatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaa 41316776  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 14235867 - 14235919
Alignment:
Q  170 tgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaag 222  Q
    |||||||| ||||||||||||||| |||||||| || | ||||||||||||||    
T  14235867 tgtgttattggggatgtctgagattgtaaagaaccctagggtgatggaagaag 14235919  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 41431922 - 41432014
Alignment:
Q  130 aggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaag 222  Q
    ||||||||||  ||||||||   ||||| ||||||| || ||| ||||||| ||||||||||||||  ||||| || || |||||||||||||    
T  41431922 aggacttgttttctgctggtactgaaacttcgtcagtggttgtcttatgggcgatgtctgagatggcgaagaacccgaatgtgatggaagaag 41432014  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 41310916 - 41310967
Alignment:
Q  114 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcag 165  Q
    ||||||||||||||  ||||| ||||||||||||||  ||||||||||||||    
T  41310916 atgttaatccatttgtaggacatgttcactgctggtaccgaaacatcgtcag 41310967  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 41366898 - 41366949
Alignment:
Q  168 gctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaag 219  Q
    ||||||||||||  |||||||||||||||||||||||| | ||| |||||||    
T  41366898 gctgtgttatggacgatgtctgagatggtaaagaatccgatggtaatggaag 41366949  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 17249010 - 17248920
Alignment:
Q  129 caggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaag 219  Q
    |||||| ||||  |||||||| ||||||||||||| |||  |||||||||||| |||||||||||  |||| || ||||||||||||||||    
T  17249010 caggacatgtttgctgctggtagcgaaacatcgtctgggattgtgttatggggaatgtctgagataataaaaaacccaaaggtgatggaag 17248920  T

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