View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16408_low_3 (Length: 463)
Name: NF16408_low_3
Description: NF16408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16408_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 36672701 - 36673134
Alignment:
| Q |
16 |
atcacagtggaaaaagggtttgagtaacaatcaactgctaacatgatttgccgtaaataaaagaagcaatatatatagtttcaaaggttaggcatttttg |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36672701 |
atcacagtggaaaaaaggtttgagtaacaatcaactgctaacatgatttgccgtaaataaaagaagcaatatatatagtttcaaaggttaggcatttttg |
36672800 |
T |
|
| Q |
116 |
gtgtcccaatacatagtaggaggtggcatctagattttctacacatacaattaaaataaacgtggatagtgtgggagaagcttacttagc-cccggggta |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| | |
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| T |
36672801 |
atgtcccaatacatagtaggaggtggcatctaggttttctacacatacaattaaaataaatgtggatagtgtgggagaagcttacttagctccaggggca |
36672900 |
T |
|
| Q |
215 |
ccggttagcatttcccttttaagtttaatagtaatctaataattgaagattgtttggtatttagtgattcgggaaaatttcttgaagaattttgtcgtga |
314 |
Q |
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|| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
36672901 |
ccagttaacatttcccttttaaatttaatagtaatctaataattgaagattgtttgatatttggtgattcgggaaaatttcttgaagaattttgttgtga |
36673000 |
T |
|
| Q |
315 |
gatatagcaatgctcataaa----ttatagtatcatcatacatacacttaaatgactaattataagagttaaacatgaagatgaatccaaacagagtgtc |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673001 |
catatagcaatgctcataaacagtttatagtatcatcatacatacacttaaatgactaattataagagttaaacatgaagatgaatccaaacagagtgtc |
36673100 |
T |
|
| Q |
411 |
aaggagccaatttggcacaactaaaccaacatct |
444 |
Q |
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| T |
36673101 |
aaggagccaatttggcacaactaaaccaacatct |
36673134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 53800233 - 53799930
Alignment:
| Q |
16 |
atcacagtggaaaaagggtttgagtaacaatcaactgctaacatgatttgccgtaaataaaagaagcaatatatatagtttcaaaggttaggcatttttg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53800233 |
atcacagtggaaaaagggtttgagtaacaatcaactgctaacatgatttgccgtaaataaaagaagcaatatagatagtttcaaaggttaggcatttttg |
53800134 |
T |
|
| Q |
116 |
gtgtcccaatacatagtaggaggtggcatctagattttctacacatacaattaaaataaacgtggatagtgtgggagaagcttacttagccccggggtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
53800133 |
gtgtcccaatacatagtaggaggtggcatctagattttctacacatacgattaaaataaacgtggatagtgtgggagaagcttacttagctatgtggt-- |
53800036 |
T |
|
| Q |
216 |
cggttagcatttcccttttaagtttaatagtaatctaataattgaagattgtttggtatttagtgattcgggaaaatttcttgaagaattttgtcgtgag |
315 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
53800035 |
-gacta--------attttaagtttaatagtaatctaataattgaagattgtttggtatttggtgattcgggaaaatttcttaaagaattttgtcgtgac |
53799945 |
T |
|
| Q |
316 |
atatagcaatgctca |
330 |
Q |
| |
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||||||||||||||| |
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| T |
53799944 |
atatagcaatgctca |
53799930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 31841855 - 31841977
Alignment:
| Q |
82 |
caatatatatagtttcaaaggttaggcatttttggtgtcccaatacatagtaggaggtggcatctagattttctacacatacaattaaaataaacgtgga |
181 |
Q |
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||||||| ||||||||||| ||| |||||||||| | || ||||||||||||||||||||||||||||||||||| || || ||||||| ||| ||||| |
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| T |
31841855 |
caatatagatagtttcaaaagttgggcatttttgtttgcctaatacatagtaggaggtggcatctagattttctacgcaaacgattaaaacaaaagtgga |
31841954 |
T |
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| Q |
182 |
tagtgtgggagaagcttacttag |
204 |
Q |
| |
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|||| ||| |||| ||||||||| |
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| T |
31841955 |
tagtatggaagaatcttacttag |
31841977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 31841993 - 31842091
Alignment:
| Q |
231 |
ttttaagtttaatagtaatctaataattgaagattgtttggta-tttagtgattcgggaaaatttcttgaagaattttgtcgtgagatatagcaatgct |
328 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| | | || ||| ||||||| || || |||||||| ||||||||| || | ||||||||||||| |
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| T |
31841993 |
ttttaagtttaatagtaatttaataattgaagattatgtcatattttggtgattcaggcaattttcttgatgaattttgttgttatatatagcaatgct |
31842091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 32891468 - 32891375
Alignment:
| Q |
231 |
ttttaagtttaatagtaatctaataattgaagattgtttggtatttagtgattcgggaaaatttcttgaagaattttgtcgtgagatatagcaa |
324 |
Q |
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||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||| ||| |||||||||||||||||| |||| ||||||||| |
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| T |
32891468 |
ttttaagtttaatagtaatttaataattgaagattatatgatatttggtgattcggaaaattttcttgaagaattttgttgtgatatatagcaa |
32891375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 32891748 - 32891659
Alignment:
| Q |
82 |
caatatatatagtttcaaaggttaggcatttttggtgtcccaataca--tagtaggaggtggcatctagattttctacacatacaattaa |
169 |
Q |
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||||||| ||||||| ||| ||| |||||||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
32891748 |
caatatagatagttttaaaagttgggcatttttgttttcccaatacacatagtaggaggtggcatctagattttctacacaaacaattaa |
32891659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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