View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_high_2 (Length: 426)
Name: NF16409_high_2
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 46367289 - 46366899
Alignment:
| Q |
1 |
agataccaactgggagaatttgatcagaaaattaaagtttgtgaggtgaggaccattttcatactagtacatagtagtatagtaaaataatagtaatcca |
100 |
Q |
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| T |
46367289 |
agataccaactgggagaatttgatcagaaaattaaagtttgtgaggtgaggaccattttcatactagtacatagtagtatagtaaaataatagtaatcca |
46367190 |
T |
|
| Q |
101 |
acgtgactatttaaatggcttttgtaatttgtttgcatgctcattcacagggatccatggcatggcacatttaatgcacttagagtcactgagatttgtt |
200 |
Q |
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| T |
46367189 |
acgtgactatttaaatggcttttgtaatttgtttgcatgctcattcacagggatccatggcatggcacatttaatgcacttagagtcactgagatttgtt |
46367090 |
T |
|
| Q |
201 |
tttcatatacaagtgaagaaggcatgggcttgttttgtttccgcatgtagaca------tatggttatggttatgtaattaatattttcttttgctaata |
294 |
Q |
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| T |
46367089 |
tttcatatacaag---ggaaggcatgggcttgttttgtttccgcatgtagacatatggttatggttatggttatgtaatttatattttcttttgctaata |
46366993 |
T |
|
| Q |
295 |
aaactagtatatagtacatgcaatttatatatctatcttcatttcatcacataaaagatgtagtactcctaacagattaaggacaaagatgatg |
388 |
Q |
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| T |
46366992 |
aaactagtatatagtacatgcaatttatatatctatcttcatttcatcacataaaagatgtagtactcctagcagattaaggacaaagatgatg |
46366899 |
T |
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