View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_high_5 (Length: 335)
Name: NF16409_high_5
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 45672723 - 45672406
Alignment:
| Q |
18 |
aaagttcgtgtgctacctcaatgtaatcatgtttttcatcctccatgtattgatgcttggctttcttcgcatgttacttgtcctgtttgtcgaacaaacc |
117 |
Q |
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| T |
45672723 |
aaagttcgtgtgctacctcaatgtaatcatgtttttcatcctccatgtattgatgcttggctttcttcacatattacttgtcctgtttgtcgaacaaacc |
45672624 |
T |
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| Q |
118 |
tcaatcatcaatgttcctgtcatttttccgtttccattgacgtacaaaacaacggtgaatgtggaagtcaaaggatacaataaaggcctaacatcatgat |
217 |
Q |
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| T |
45672623 |
tcaatcatcaatgttcctgtcatttttccgtttccattgacgtacaaaacaacggtgaatgtggaagtcaaaggatacaataaaggcctaacatcatgat |
45672524 |
T |
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| Q |
218 |
tgttgatctatgtgctgattctccgcaatatcaaggatcgcatgtcggttacatgagagagtccaatctagattgattattgatttatcttacttatttt |
317 |
Q |
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| T |
45672523 |
tgttgatctatgtgctgattctccgcaatatcaaggatcgcatgtcggttacatgagagagtccaatctagattgattattgatttatcttacttatttt |
45672424 |
T |
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| Q |
318 |
tctagaacaattcatagt |
335 |
Q |
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| T |
45672423 |
tctagaacaattcatagt |
45672406 |
T |
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