View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_high_6 (Length: 313)
Name: NF16409_high_6
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 2434645 - 2434359
Alignment:
| Q |
10 |
catcatcagtttgaaagtaagttttcttattctgctacgtaaattattttctgacatcaaattgacttttatacactttatgtagatattcaggcaataa |
109 |
Q |
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| T |
2434645 |
catcatcagtttgaaagtaagttttcttattctgctacgtaaattattttctgacatcaaattgacttttatacactttatgtagatattcaggcaataa |
2434546 |
T |
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| Q |
110 |
tttacttattatcaccaataagcacaagtatacaagtgatcaagttagtgatattagtattgaccactgattgtttattccttacagtatcctaaataaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434545 |
tttacttattatcaccaataagcacaagtatacaagtgatcaagttagtgatattagtattgaccactgattgtttattccttacagtatcctaaataaa |
2434446 |
T |
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| Q |
210 |
gtagcaatgcacgataaattgtacttacgaaaaagttcttaatgtacaaatgctgaaaggttcaatcttatttgagttgttgttagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434445 |
gtagcaatgcacgataaattgtacttacgaaaaagttcttaatgtacaaatgctgaaaggttcaatcttatttgagttgttgttagt |
2434359 |
T |
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