View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16409_high_7 (Length: 300)
Name: NF16409_high_7
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 38013523 - 38013259
Alignment:
| Q |
20 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38013523 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
38013424 |
T |
|
| Q |
120 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttattgttgcagcagtcagtgtttggatccca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
38013423 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttgttgttgcagcagtctgtgtttggatccca |
38013324 |
T |
|
| Q |
220 |
tgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38013323 |
tgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
38013259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 37697567 - 37697804
Alignment:
| Q |
20 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
119 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| | ||| ||||||||||||| |||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
37697567 |
atagtgccgacgaggttggggatgcgggagagagagaaatcgtcaagaaaagggaggttagtgatggagggtggaaatggaacaggtttagggaggttga |
37697666 |
T |
|
| Q |
120 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttattgttgcagcagtcagtgtt---tggatc |
216 |
Q |
| |
|
||| |||||| ||||||| | ||||||| |||||| |||||||||||| |||||||| | ||||||||||||| |||| |||||| |
|
|
| T |
37697667 |
ggtcgtcgagaccaaggttggcgactcggt------------ctgagtcgcatgagacacccttccatttgtcgttgcagcagtcattgttgtttggatc |
37697754 |
T |
|
| Q |
217 |
ccatgaagagagttggctagggttgccaaattcttttttgatttggagta |
266 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
37697755 |
ccatgaagagagtttggttgggttgccaaattcttttttgatttggagta |
37697804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 37989634 - 37989542
Alignment:
| Q |
192 |
tgttgcagcagtcagtgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
284 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37989634 |
tgttacagcagtcgatggttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagtagggttcttttgtcatctg |
37989542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 37993823 - 37993735
Alignment:
| Q |
193 |
gttgcagcagtcagtgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcat |
281 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||| | | ||||||||||||| |||||||||||| | |||||| ||||||||| |
|
|
| T |
37993823 |
gttgcagcagtcggtagttgaatcccatgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggtttttttgtcat |
37993735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 37993945 - 37993874
Alignment:
| Q |
65 |
aggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaaggttctcgagatcaagg |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||| ||||| |||| || |||||||||| |
|
|
| T |
37993945 |
aggaaagggaggttgaatatggagggtggaattggaacagggtgaggaaggtcgaggtcctggagatcaagg |
37993874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 18138386 - 18138354
Alignment:
| Q |
247 |
ttcttttttgatttggagtagggttcttttgtc |
279 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
18138386 |
ttctttcttgatttggagtagggttcttttgtc |
18138354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University