View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_high_9 (Length: 275)
Name: NF16409_high_9
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 52952589 - 52952825
Alignment:
| Q |
20 |
gacctctttccaaactttgtgtatacgagagctttagtgcaccagttacccctgatatttaaaattgtactactattacaatagtaattcaaagtctatt |
119 |
Q |
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| T |
52952589 |
gacctcttttcaaactctttatatacgagagctttagtgcaccggttaccc-tgatatttaaaattgtactactattacaatagtaattcaaagtctatt |
52952687 |
T |
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| Q |
120 |
caacnnnnnnnngcctcggnnnnnnngtgtagtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagt |
219 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52952688 |
caacttttttttgcctcggaaaaaaagtgtagtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagt |
52952787 |
T |
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| Q |
220 |
cactcactgaactagaggcagagtcactatggaatttc |
257 |
Q |
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| T |
52952788 |
cactcactgaactagaggcagagtcgctatggaatttc |
52952825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 31673080 - 31673190
Alignment:
| Q |
146 |
gtgtagtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtca |
245 |
Q |
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| T |
31673080 |
gtgtagtgaatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcacttggtgaactggaggcagagtca |
31673179 |
T |
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| Q |
246 |
ctatggaattt |
256 |
Q |
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| T |
31673180 |
ctatggaattt |
31673190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 31922587 - 31922485
Alignment:
| Q |
154 |
aatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcactatggaa |
253 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
31922587 |
aatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcactcggtgaactagaggcagagtcactacggaa |
31922488 |
T |
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| Q |
254 |
ttt |
256 |
Q |
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||| |
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| T |
31922487 |
ttt |
31922485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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