View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_low_10 (Length: 296)
Name: NF16409_low_10
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 51 - 296
Target Start/End: Original strand, 29290835 - 29291080
Alignment:
| Q |
51 |
acgcgcaagctccaactcttccaaattctccacattgtaaacacaaaagtagatgctcgttctgcactaaaaattggtagcgcagaaaaaatgattcttt |
150 |
Q |
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| T |
29290835 |
acgcgcaagctccaactcttccaaattctccacattgtaaacacagaagtaggtgctcgttctgcactaaaaattggtagcgcagaaaaaatgattcttt |
29290934 |
T |
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| Q |
151 |
gaaactccaagccatttcttggaaactccaacaatcaacacttcctgcacattgaatnnnnnnngatgcaaagaatcttcaccattttcctcataaaggc |
250 |
Q |
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| T |
29290935 |
gaaactccaagccatttcttggaaactccaacaatcaacacttcctgcacattgaataaaaaaagatgcaaagaatcttcaccattttcctcataaaggc |
29291034 |
T |
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| Q |
251 |
gagcattttgatgaatatagttaccacttgaactagttttgcttcc |
296 |
Q |
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| T |
29291035 |
gagcatttcgatgaatatagtgaccacttgaactagttttgcttcc |
29291080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 35236375 - 35236647
Alignment:
| Q |
23 |
tgcgcgcgtttctgtttgtttctcccaaacgcgcaagctccaactcttccaaattctccacattgtaaacacaaaagtagatgctcgttctgcactaaaa |
122 |
Q |
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| T |
35236375 |
tgcgcgtgtttctgtttgtttctcccaaacacgcaagttccgactcttccaaattctccacaatatgaacacaaaagtagatgctcattctgcactaaaa |
35236474 |
T |
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| Q |
123 |
attggtagcgcagaaaaaatgattctttgaaactccaagccatttcttggaaactccaacaatcaacacttcctgcacattgaatnnnnnnngatgcaaa |
222 |
Q |
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| T |
35236475 |
attggcagcgcagaaaaaatgattctttgaaactccaa-ccgtatcttcgaaactccaacaagcaacacttcctgcacattgaataaaaaaagatgcaaa |
35236573 |
T |
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| Q |
223 |
gaatcttcaccattttcctcataaaggcgagcattttgatgaatatagttaccacttgaactagttttgcttcc |
296 |
Q |
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| T |
35236574 |
gaatcttcaccattttcctcataaaggcgagcatttcgatgaatatagtgaccacttgaactagttttgcttcc |
35236647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 29287666 - 29287703
Alignment:
| Q |
19 |
gagatgcgcgcgtttctgtttgtttctcccaaacgcgc |
56 |
Q |
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| T |
29287666 |
gagatgcgcgtgtttctgtttgtttctcccaaacgcgc |
29287703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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