View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_low_14 (Length: 249)
Name: NF16409_low_14
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13067309 - 13067538
Alignment:
| Q |
1 |
tcaatgaacgttatccacatcatgagcagagttttggcaactatgagagggggtccaactaattccaagaaattttttatatttttggaggtggtaatgt |
100 |
Q |
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| T |
13067309 |
tcaatgaacgttatccacatcatgagcagagttttggcaactatgagagggggtccaactaattccatgaaattttttatatttttggaggtggtaatgt |
13067408 |
T |
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| Q |
101 |
ggtattataaattctaattacaacagaagaagactaattatcaaaaggaaaagattcaagaacttgttccaacatactagtcagaaagttactatttatt |
200 |
Q |
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| T |
13067409 |
ggtattataaattctaattacaacagaagaagactaattctcaaaaggaaaagattcaagaacttgttccaacatactagtcagaaagttactatttatt |
13067508 |
T |
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| Q |
201 |
gatgatgtgtctgaagcaggttctcaggtg |
230 |
Q |
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| T |
13067509 |
gatgatgtgtctgaagcaggttctcaggtg |
13067538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 30367354 - 30367399
Alignment:
| Q |
136 |
aattatcaaaaggaaaagattcaagaacttgttccaacatactagt |
181 |
Q |
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| T |
30367354 |
aattctcaaaaggaaaagcttcaagaacttgttccaacaaactagt |
30367399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 30367206 - 30367301
Alignment:
| Q |
2 |
caatgaacgttatccacatcatgagca-gagttttggcaactatgagagggggtccaactaattccaagaaattttttatatttttggaggtggta |
96 |
Q |
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| T |
30367206 |
caatgaacgttaaccacatcgcaagcaagaattttggcaactacgggagggggtctaataacttccaagaaatttttgaattttttggaggtggta |
30367301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 13011101 - 13011065
Alignment:
| Q |
194 |
atttattgatgatgtgtctgaagcaggttctcaggtg |
230 |
Q |
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| T |
13011101 |
atttattgatattgtgtctgaagcaggttctcaggtg |
13011065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 31376441 - 31376394
Alignment:
| Q |
136 |
aattatcaaaaggaaaagattcaagaacttgttccaacatactagtca |
183 |
Q |
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| T |
31376441 |
aattctcaaaaggaaaagcttcaagaacttgtttcaacaaactagtca |
31376394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 31376558 - 31376494
Alignment:
| Q |
32 |
ttttggcaactatgagagggggtccaactaattccaagaaattttttatatttttggaggtggta |
96 |
Q |
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| T |
31376558 |
ttttggcaactacgggagggggtctatcaacttccaagaaatttttgaattttttggaggtggta |
31376494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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