View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16409_low_15 (Length: 244)

Name: NF16409_low_15
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16409_low_15
NF16409_low_15
[»] chr6 (21 HSPs)
chr6 (19-170)||(5350767-5350918)
chr6 (19-177)||(5102158-5102316)
chr6 (19-177)||(5137210-5137368)
chr6 (80-233)||(5434685-5434838)
chr6 (21-171)||(5426291-5426441)
chr6 (67-202)||(5157116-5157252)
chr6 (31-182)||(5447972-5448123)
chr6 (67-182)||(5371028-5371143)
chr6 (67-169)||(5097165-5097267)
chr6 (80-169)||(5354109-5354198)
chr6 (80-179)||(5397447-5397546)
chr6 (67-178)||(5127930-5128041)
chr6 (19-84)||(5128054-5128119)
chr6 (99-168)||(5181474-5181543)
chr6 (96-169)||(5243407-5243480)
chr6 (73-168)||(5383750-5383845)
chr6 (31-77)||(5157272-5157318)
chr6 (19-85)||(5370950-5371016)
chr6 (96-169)||(5066189-5066262)
chr6 (105-154)||(5256901-5256950)
chr6 (105-145)||(5283967-5284007)
[»] chr7 (1 HSPs)
chr7 (19-168)||(36213382-36213531)
[»] scaffold0294 (1 HSPs)
scaffold0294 (19-168)||(8478-8621)
[»] chr5 (1 HSPs)
chr5 (96-170)||(8878113-8878187)
[»] chr4 (5 HSPs)
chr4 (22-83)||(4361459-4361520)
chr4 (37-83)||(4335718-4335764)
chr4 (151-185)||(48847612-48847646)
chr4 (99-168)||(4345162-4345231)
chr4 (22-78)||(4345028-4345084)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 5350767 - 5350918
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatggg 118  Q
    ||||||||||  |||||||||||| ||||||||||||| ||||| || |||||||| ||| ||||||||||||||| |||||||||||||||||||| ||    
T  5350767 tggatgccttgtatgccacaaattataaggagttggaatcaactacagctacatcaaaagtatcaaaacattccttgaagtctcttttaattcaaattgg 5350866  T
Q  119 aatgaattgccaagttaccaatattctggaagagataattttacaggtttga 170  Q
    ||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  5350867 aatgaattgccaagccactaatattctgaaagagataattttacaggtttga 5350918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 5102316 - 5102158
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatggg 118  Q
    ||||||||||  || ||| ||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||    
T  5102316 tggatgccttgcataccataaatcgtaaggagttggaaccaactgcaactacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattgg 5102217  T
Q  119 aatgaattgccaagttaccaatattctggaagagataattttacaggtttgaaatactc 177  Q
    ||||||||||||||  || ||||||||| |||| |||||||||||||||||| ||||||    
T  5102216 aatgaattgccaagccactaatattctgaaagatataattttacaggtttgacatactc 5102158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 5137368 - 5137210
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatggg 118  Q
    ||||||||||  || ||| ||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||    
T  5137368 tggatgccttgcataccataaatcgtaaggagttggaaccaactgcaactacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattgg 5137269  T
Q  119 aatgaattgccaagttaccaatattctggaagagataattttacaggtttgaaatactc 177  Q
    ||||||||||||||  || ||||||||| |||| |||||||||||||||||| ||||||    
T  5137268 aatgaattgccaagccactaatattctgaaagatataattttacaggtttgacatactc 5137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 5434685 - 5434838
Alignment:
Q  80 atcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttgaaatactctc 179  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| || | ||||| ||||| |||||||| |||||||||||||||||| |||||    
T  5434685 atcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaactcaccaacattctcgaagagatcattttacaggtttgaaatgctctc 5434784  T
Q  180 tctatccccctcttttatgtctgccttgtgtgtatcacttcatatattagaatt 233  Q
    ||||||||| | |||||||| ||| ||||||||||||| ||||||||| |||||    
T  5434785 tctatccccttattttatgtttgctttgtgtgtatcacatcatatatttgaatt 5434838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 5426291 - 5426441
Alignment:
Q  21 gatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaa 120  Q
    ||||||||  ||||||||| || ||||||||||||||||||| |  ||||||| |||| ||||||||||||||| || ||||||||||||||||| ||||    
T  5426291 gatgccttgtatgccacaagttataaggagttggaaccaactactgctacatcccaagtatcaaaacattccttaaaatctcttttaattcaaattggaa 5426390  T
Q  121 tgaattgccaagttaccaatattctggaagagataattttacaggtttgaa 171  Q
    ||||||||||||   |  |||||||| ||||||||||||||||||||||||    
T  5426391 tgaattgccaagcctctgatattctgaaagagataattttacaggtttgaa 5426441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 5157252 - 5157116
Alignment:
Q  67 ctacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggt 166  Q
    ||||||| |||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||    
T  5157252 ctacatcccaagtatcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt 5157153  T
Q  167 ttgaaatactctctctatc-cccctcttttatgtctg 202  Q
    ||| ||||||||||||||| ||||| || ||||||||    
T  5157152 ttgcaatactctctctatctccccttttatatgtctg 5157116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 5447972 - 5448123
Alignment:
Q  31 atgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgcca 130  Q
    |||||||||||| |||||||||||||| ||| |||  ||||||||||  |||||| |||| ||| |||||||||||||||||||| |||||||||||| |    
T  5447972 atgccacaaattataaggagttggaactaacggcagttacatcacaaatatcaaaccatttcttgaagtctcttttaattcaaattggaatgaattgcga 5448071  T
Q  131 agttaccaatattctggaagagataattttacaggtttgaaatactctctct 182  Q
    ||| ||  |||||||| ||||||||||||||||||| ||| || ||||||||    
T  5448072 agtcactgatattctgaaagagataattttacaggtctgacattctctctct 5448123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 5371028 - 5371143
Alignment:
Q  67 ctacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggt 166  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||||| ||||||||||||| | | || ||||||||| |||||||||||||||||||    
T  5371028 ctacatcacaagtatcaaaacattcctcaacgtctcttttaattcaaattggaatgaattgccgaataactaatattctgaaagagataattttacaggt 5371127  T
Q  167 ttgaaatactctctct 182  Q
    |||| |||||||||||    
T  5371128 ttgacatactctctct 5371143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 5097165 - 5097267
Alignment:
Q  67 ctacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggt 166  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |||||| |||| |||||||    
T  5097165 ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 5097264  T
Q  167 ttg 169  Q
    |||    
T  5097265 ttg 5097267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 5354198 - 5354109
Alignment:
Q  80 atcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttg 169  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||| ||||||||    
T  5354198 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 5354109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 5397447 - 5397546
Alignment:
Q  80 atcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttgaaatactctc 179  Q
    |||||||||||||   ||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||||||    
T  5397447 atcaaaacattccccgaagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttggcatactctc 5397546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 5128041 - 5127930
Alignment:
Q  67 ctacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggt 166  Q
    |||||||||||| ||||||||||||||  ||||| || ||||||||||| |||| |||||||||||| || ||||||||| ||| ||| |||||||||||    
T  5128041 ctacatcacaagtatcaaaacattcctcgaagtcgctattaattcaaattggaaagaattgccaagtcactaatattctgaaagggattattttacaggt 5127942  T
Q  167 ttgaaatactct 178  Q
    |||| |||||||    
T  5127941 ttgacatactct 5127930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 5128119 - 5128054
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaa 84  Q
    ||||||||||  |||||||||||| |||||||||||||| |||||||| ||||||||||| |||||    
T  5128119 tggatgccttgtatgccacaaattataaggagttggaacaaactgcaagtacatcacaagtatcaa 5128054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 5181543 - 5181474
Alignment:
Q  99 tctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggttt 168  Q
    ||||| || |||||||| ||||||||||||||||| ||||||||||||  ||| |  |||||||||||||    
T  5181543 tctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggttt 5181474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 5243480 - 5243407
Alignment:
Q  96 aagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttg 169  Q
    |||||| || |||| ||||||||||||||||||||||| ||||||| |||  |||| |  ||||||||||||||    
T  5243480 aagtctgttctaatacaaatgggaatgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttg 5243407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 5383750 - 5383845
Alignment:
Q  73 cacaagcatcaaaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggttt 168  Q
    |||||| ||||| | || ||| ||| |||||||| |||||||||||||||||||| ||| || | ||||||||| ||||   ||| ||||||||||    
T  5383750 cacaagtatcaagaaatccctccaaatctcttttcattcaaatgggaatgaattgtcaaattgcaaatattctgaaagatcaaatcttacaggttt 5383845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 5157318 - 5157272
Alignment:
Q  31 atgccacaaattctaaggagttggaaccaactgcaactacatcacaa 77  Q
    ||||||||||||||||| | |||||||||||| || |||||||||||    
T  5157318 atgccacaaattctaagaatttggaaccaactacagctacatcacaa 5157272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 5370950 - 5371016
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaa 85  Q
    |||||| |||| |||| | | ||| ||||||| ||||||||||||||| ||||||||||| ||||||    
T  5370950 tggatgtcttatatgcgatagattataaggagatggaaccaactgcaattacatcacaagtatcaaa 5371016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 5066262 - 5066189
Alignment:
Q  96 aagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttg 169  Q
    |||||| || |||| |||||||| |||||||||||||| ||||||| |||| |||| |  || |||||||||||    
T  5066262 aagtctgttctaatacaaatgggtatgaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttg 5066189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 5256950 - 5256901
Alignment:
Q  105 ttaattcaaatgggaatgaattgccaagttaccaatattctggaagagat 154  Q
    ||||||||||||||||| |||||||| || |||||||||||  |||||||    
T  5256950 ttaattcaaatgggaataaattgccatgtcaccaatattctcaaagagat 5256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 5284007 - 5283967
Alignment:
Q  105 ttaattcaaatgggaatgaattgccaagttaccaatattct 145  Q
    |||||||||||||||||||||| |||||| ||| |||||||    
T  5284007 ttaattcaaatgggaatgaatttccaagtcaccgatattct 5283967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 36213531 - 36213382
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatggg 118  Q
    ||||||||||| ||||||| |||| |||||| ||||||| | || ||  |||||| |||| ||||| | ||||||| || ||| |||| |||||||||||    
T  36213531 tggatgccttatatgccactaattataaggaattggaactagctccacatacatcgcaagtatcaagaaattccttgaaatcttttttcattcaaatggg 36213432  T
Q  119 aatgaattgccaagttaccaatattctggaagagataattttacaggttt 168  Q
    ||||||||||||| || |||||||| || |||||| |||| |||||||||    
T  36213431 aatgaattgccaactttccaatattttgaaagagaaaattgtacaggttt 36213382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 8621 - 8478
Alignment:
Q  19 tggatgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatcaaaacattccttcaagtctcttttaattcaaatggg 118  Q
    ||||||||||| ||||| |||||||||| || |||||||||||| |||||      |||| ||| | | |||||| ||| |||||||| |||| ||||||    
T  8621 tggatgccttatatgccgcaaattctaaagaattggaaccaactacaact------caagtatctagaaattcctccaaatctcttttcattccaatggg 8528  T
Q  119 aatgaattgccaagttaccaatattctggaagagataattttacaggttt 168  Q
    ||||||||| |||||| | ||||||||| ||| | |||||||||||||||    
T  8527 aatgaattgtcaagttgcaaatattctgaaagggctaattttacaggttt 8478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 8878113 - 8878187
Alignment:
Q  96 aagtctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggtttga 170  Q
    |||||||| || |||||||||||||||||||||||| | || |||| |||| |||||| ||||||||||||||||    
T  8878113 aagtctctatttattcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttga 8878187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 4361459 - 4361520
Alignment:
Q  22 atgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaagcatca 83  Q
    |||| |||| ||| |||||||| ||||| |||||| ||||||||||||||||||||| ||||    
T  4361459 atgctttaagtgcaacaaattccaaggaattggaatcaactgcaactacatcacaagtatca 4361520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 4335718 - 4335764
Alignment:
Q  37 caaattctaaggagttggaaccaactgcaactacatcacaagcatca 83  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  4335718 caaattctaaggaattgaaatcaactgcaactacatcacaagtatca 4335764  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 48847646 - 48847612
Alignment:
Q  151 agataattttacaggtttgaaatactctctctatc 185  Q
    |||||||||||||||||||| ||||||||||||||    
T  48847646 agataattttacaggtttgacatactctctctatc 48847612  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 4345162 - 4345231
Alignment:
Q  99 tctcttttaattcaaatgggaatgaattgccaagttaccaatattctggaagagataattttacaggttt 168  Q
    |||||||||||||| |||||||||| ||||| | |  ||||||||||  ||||||| || ||||||||||    
T  4345162 tctcttttaattcagatgggaatgagttgcctaatctccaatattctcaaagagattatcttacaggttt 4345231  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 4345028 - 4345084
Alignment:
Q  22 atgccttaaatgccacaaattctaaggagttggaaccaactgcaactacatcacaag 78  Q
    ||||||||| ||| |||| ||||| ||| |||||| |||||||||||||||| ||||    
T  4345028 atgccttaagtgcaacaagttctacggaattggaatcaactgcaactacatcccaag 4345084  T

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