View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16409_low_4 (Length: 381)
Name: NF16409_low_4
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_low_4 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 32412541 - 32412192
Alignment:
| Q |
13 |
aaaatactttaccgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaa |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32412541 |
aaaatactttactgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaa |
32412442 |
T |
|
| Q |
113 |
agagaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32412441 |
agagaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatgg |
32412342 |
T |
|
| Q |
213 |
aaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattgg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32412341 |
aaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggcgtggactttatgctgacattgg |
32412242 |
T |
|
| Q |
313 |
aataacggttctcgtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32412241 |
aataacggttctcgtagaacgaagccttgtaaaaattgaaaagaataaca |
32412192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 49 - 362
Target Start/End: Complemental strand, 6907392 - 6907079
Alignment:
| Q |
49 |
ttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagaga |
148 |
Q |
| |
|
||||||||||||||| || | ||| ||||| |||| ||||||||||||| || |||||||||| |||||||| |||||| | ||||| |||| | | |
|
|
| T |
6907392 |
ttactgtggaggattacccttggctgttgaagtcctcggatcttacttatttgaaaggacaaaagaagaatggaaaagtgtgctatcaaagttagaaaaa |
6907293 |
T |
|
| Q |
149 |
attcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttcttta |
248 |
Q |
| |
|
||||| |||| |||| ||||||||| | | |||||||||||| ||||| | ||||| | | |||| |||||||||||| |||||| |||||||| |
|
|
| T |
6907292 |
attccccatgaagaagtgcaagagaaattgaaaataagctatgatggtttgacagatgacacaaagaaggctatatttcttgatgtatgttgtttcttta |
6907193 |
T |
|
| Q |
249 |
tcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaaaaat |
348 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||| || |||||||||| ||||| || |||||| | || ||| ||||| | |||||| ||||| | |
|
|
| T |
6907192 |
tcggcaaggacagagactatgttaccgagatactaaacggttgtggactttttgctggtataggaatagctgtcctcatagagaggagccttttaaaagt |
6907093 |
T |
|
| Q |
349 |
tgaaaagaataaca |
362 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6907092 |
tgaaaagaataaca |
6907079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 44 - 362
Target Start/End: Complemental strand, 7166214 - 7165896
Alignment:
| Q |
44 |
gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag |
143 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||| || | || ||||||||||| || ||||||||| ||||||| ||||||| | | ||| ||| |
|
|
| T |
7166214 |
gttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgtactcttgaaattag |
7166115 |
T |
|
| Q |
144 |
agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt |
243 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |
|
|
| T |
7166114 |
agagaattcccaatgatcaagtgcaagagaaactgagaataagctatgacggtttaaaggatgatatggcaaaggatatatttcttgatatatgttgttt |
7166015 |
T |
|
| Q |
244 |
ctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgta |
343 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7166014 |
ctttatcggcaaggatagagcctatgttactgagatactaaatggttgtggactttatgctgacattggaataacggtcctcgtagagcggagccttgtg |
7165915 |
T |
|
| Q |
344 |
aaaattgaaaagaataaca |
362 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7165914 |
aaaattgaaaagaataaca |
7165896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 3326547 - 3326212
Alignment:
| Q |
27 |
aactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaag |
126 |
Q |
| |
|
||||||| | ||| || |||||||| ||||||||||| ||| ||||||||||| ||||||| || |||||||||| ||||||||| |||||||| ||| |
|
|
| T |
3326547 |
aactctccaaaaaagtagttgcttattgtggaggattaccagttgctcttgaagtccttggttcatacttatatgagaggacaaaacaagaatggataag |
3326448 |
T |
|
| Q |
127 |
tgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatattt |
226 |
Q |
| |
|
|||| | | ||| ||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3326447 |
tgtactcttgaaattagagagaattcccaatgatcaagtgcaagagaaactgagaattagctacgatggtttaaaggatgatatggaaaaagatatattt |
3326348 |
T |
|
| Q |
227 |
cttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcg |
326 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| || ||| | ||||| ||||||||||||| |||||||||||||| | |||||||||| |||||| |
|
|
| T |
3326347 |
cttgacatatgttgtttctttataggcaaggatagagccgaagttacagagatactaaatggctgtggactttatgcaaatattggaataagtgttctca |
3326248 |
T |
|
| Q |
327 |
tagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3326247 |
tagagcggagccttgtaaaaattgaaaagaataaca |
3326212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 3408885 - 3408549
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaa |
125 |
Q |
| |
|
|||||||| |||||||| | |||||| |||||||| || ||||| ||||||||| |||||||||| ||||||| || ||||||||| |||||||| || |
|
|
| T |
3408885 |
gaactctcaagaaatgtggctgcttattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggataa |
3408786 |
T |
|
| Q |
126 |
gtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatt |
225 |
Q |
| |
|
| ||| | ||||| ||||||||||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
3408785 |
gcgtactatcaaagttagagagaattcccaatgatcaagtgcacgagaagctgagaataagctatgatggtttaaaggatgatatggtaaaggatatatt |
3408686 |
T |
|
| Q |
226 |
tcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctc |
325 |
Q |
| |
|
||||||||| |||| ||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
3408685 |
tcttgacatttgttgtttctttattggtaaggacagggcctatgttacagagatactaaatggctgtggactttatgctgatattggaatagcggtcctc |
3408586 |
T |
|
| Q |
326 |
gtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
|||| || ||||| ||||| |||| |||||||||| |
|
|
| T |
3408585 |
atagaccggagcctcctaaaagttgagaagaataaca |
3408549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 3264093 - 3263757
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaa |
125 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||||||| ||||| ||||| ||| |||| || ||||| || |||| ||||||||| ||||||| || |
|
|
| T |
3264093 |
gaactctcaagaaacgtagttgcttattgcagaggattaccactggctctggaagtcctaggttcttagttgtatgagaggacaaaagaagaatgggaaa |
3263994 |
T |
|
| Q |
126 |
gtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatt |
225 |
Q |
| |
|
|| || | |||||| ||||||||||||| ||||| ||||| |||||||| || |||||||| || || ||||||||||||| |||||||||||||||||| |
|
|
| T |
3263993 |
gtatactctcaaaattagagagaattcccaatgatcaagtgcaagagaagctgagaataagttacgatggtttaaaggatggtatggaaaaggatatatt |
3263894 |
T |
|
| Q |
226 |
tcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctc |
325 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| || || || || ||||||| ||||| ||||||||| |||||| ||||||||| || | ||| |
|
|
| T |
3263893 |
tcttgacatatgttgtttctttatcggcaaagacagagcttacgtaacagagatacttaatggctgtggacttcatgctgttattggaatagcgatcctc |
3263794 |
T |
|
| Q |
326 |
gtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||||| |
|
|
| T |
3263793 |
atagaacggagccttgtaaaaatggaaaagaataaca |
3263757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 362
Target Start/End: Complemental strand, 3268773 - 3268455
Alignment:
| Q |
44 |
gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag |
143 |
Q |
| |
|
|||| ||||||| ||||||| ||||| ||||||||| || ||||||||||||| || ||||||| | |||||||| ||||||||| ||||| ||| |
|
|
| T |
3268773 |
gttgtttactgtagaggattaccactggctcttgaagtcattggatcttacttgcgtgacaggacaatacaagaatggataagtgtattatcaaagttag |
3268674 |
T |
|
| Q |
144 |
agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt |
243 |
Q |
| |
|
||||||| || |||| |||| || ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
3268673 |
agagaatacccgatgataaagtgcatgagaaactaagaataagctatgatggtttaaagaatgatacagaaaaggatatatttcttgacatatgttgttt |
3268574 |
T |
|
| Q |
244 |
ctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgta |
343 |
Q |
| |
|
|||||| || |||||||| || |||||| | |||| || |||| |||| ||||||||| ||||||||||| || ||| ||||| ||||||| || |
|
|
| T |
3268573 |
ctttattggtaaggacagagcatatgtttcagagattatagatggttgtgacttttatgctggtattggaataactgtcctcatagagagaagcctccta |
3268474 |
T |
|
| Q |
344 |
aaaattgaaaagaataaca |
362 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
3268473 |
aaaattgaaaagagtaaca |
3268455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 39 - 362
Target Start/End: Original strand, 3313375 - 3313698
Alignment:
| Q |
39 |
atgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaa |
138 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||| ||||||||| |||||||||||||||| | |||| |||| ||| ||| |||||||| ||||| |
|
|
| T |
3313375 |
atgtagttgcctattgtggtggactgccactagctcttgaagtccttggatcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaa |
3313474 |
T |
|
| Q |
139 |
actagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgt |
238 |
Q |
| |
|
||||| | || |||||||| ||| |||| |||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
3313475 |
gctagaaaagatacctaatgatcaaatacatgagaaactaaaaataagctttgacggtttaagggatcatatggaaaaggatatatttcttgatgtgtgt |
3313574 |
T |
|
| Q |
239 |
tttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagcc |
338 |
Q |
| |
|
| |||||||||||| ||||| || || ||||| || || ||||||||||| ||||||||| ||||||| ||||||||||| || || | |||||||||| |
|
|
| T |
3313575 |
tgtttctttatcggtaaggatagagcatatgtcacaaatatactaaatggttgtggacttcatgctgatattggaataacagtgctgattgagcgaagcc |
3313674 |
T |
|
| Q |
339 |
ttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
| |||||||||||||| |||||| |
|
|
| T |
3313675 |
taataaaaattgaaaagtataaca |
3313698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 119 - 339
Target Start/End: Complemental strand, 3287927 - 3287707
Alignment:
| Q |
119 |
tggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaagg |
218 |
Q |
| |
|
|||| ||||||||| ||||| | | ||| |||||| ||| | ||| | ||||| ||||| |||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
3287927 |
tggataagtgtattctcaaatccaaagacaattcccaatcatcaaatccaagaaaaactgagaataagctatgatgggttaaatcaagatatggaaaagg |
3287828 |
T |
|
| Q |
219 |
atatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataac |
318 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || |||||||| ||||||| || ||||||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
3287827 |
atatatttcttgacatttgttgtttctttattggtaaggacagaacctatgtcacagagatactaaatggctgtggacttgatgctgacactggaataac |
3287728 |
T |
|
| Q |
319 |
ggttctcgtagagcgaagcct |
339 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
3287727 |
agtcctcgtagagcggagcct |
3287707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 3393148 - 3392817
Alignment:
| Q |
29 |
ctctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatgga-aggacaaaaagagaatggacaagt |
127 |
Q |
| |
|
||||| ||| |||| ||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||||| || | |||| |||| ||| ||| ||| |
|
|
| T |
3393148 |
ctctcaagatatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttat-tgaagaggagaaaacaagagtggcagagt |
3393050 |
T |
|
| Q |
128 |
gtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttc |
227 |
Q |
| |
|
||||| ||||| || || | ||| || ||||| ||| |||| |||||||||| ||| |||| | | ||||||| ||| |||||||||||||||||||| |
|
|
| T |
3393049 |
gtattatcaaagcttgaaaaaatacccaatgatcaaatacatgagaaactaaaaattagctttaatggtttaagcgatcgtatggaaaaggatatatttc |
3392950 |
T |
|
| Q |
228 |
ttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgt |
327 |
Q |
| |
|
|||| | |||| |||||||||||||||||| || || |||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| || | | |
|
|
| T |
3392949 |
ttgatgtctgttgtttctttatcggcaaggatagagcttatgttacaaagatactaaatggttgtggacttcatgctgatattggaataacagtgttgat |
3392850 |
T |
|
| Q |
328 |
agagcgaagccttgtaaaaattgaaaagaataa |
360 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| |
|
|
| T |
3392849 |
agagagaagcctcataaaagttgaaaagaataa |
3392817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 360
Target Start/End: Original strand, 3362735 - 3363066
Alignment:
| Q |
29 |
ctctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtg |
128 |
Q |
| |
|
||||| ||| |||| ||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||| | |||| |||| ||| ||| |||| |
|
|
| T |
3362735 |
ctctcaagagatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttgttcaagaggaaaaaacaagagtggcggagtg |
3362834 |
T |
|
| Q |
129 |
tattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttct |
228 |
Q |
| |
|
|||| ||||| ||||| | || || ||||| ||| |||| |||| ||||| |||||||| ||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
3362835 |
tattatcaaagctagaaaagatacccaatgatcaaatacacgagatactaaaaataagctttgatggtttaaaggatcgtatggaaaagaatatatttct |
3362934 |
T |
|
| Q |
229 |
tgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgta |
328 |
Q |
| |
|
||| | || | |||||||||||| ||||| || || |||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| || | || |
|
|
| T |
3362935 |
tgatgtctgctgtttctttatcggtaaggatagagcttatgttacaaagatactaaatggttgtggacttaatgctgatattggaataacagtgttgata |
3363034 |
T |
|
| Q |
329 |
gagcgaagccttgtaaaaattgaaaagaataa |
360 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |
|
|
| T |
3363035 |
gagagaagcctcataaaagttgaaaagaataa |
3363066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 44 - 339
Target Start/End: Original strand, 13786168 - 13786463
Alignment:
| Q |
44 |
gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag |
143 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||| |||| ||| ||| || ||||||||| |||||||| ||||||| |||||||| | | |
|
|
| T |
13786168 |
gttgcttattgtggaggattaccactggctcttgaaatcattgggtctatgttacattacaggacaaaacaagaatggagaagtgtactgtcaaaatttg |
13786267 |
T |
|
| Q |
144 |
agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt |
243 |
Q |
| |
|
||| |||||| || | | | | || ||| ||| | |||||| ||||| ||||||| ||||||||||| ||||| | |||||||||||||||||| ||| |
|
|
| T |
13786268 |
agaaaattccccattatctaatgcagcagatactgaaaataagttatgatggtttaatggatgatatggtaaaggctgtatttcttgacatatgttgttt |
13786367 |
T |
|
| Q |
244 |
ctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagcct |
339 |
Q |
| |
|
|||||| || |||||| ||||||||||| ||||||||||||| |||||||||| |||||| ||||||||| | || ||| ||||||| ||||| |
|
|
| T |
13786368 |
ctttattggtgaggacaaagcctatgttacagagatactaaatggctgtggactttgtgctgatattggaatagctgtcctcatagagcggagcct |
13786463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 316
Target Start/End: Original strand, 31174363 - 31174653
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaa |
125 |
Q |
| |
|
|||||| ||| ||| || |||||||| || |||||||| ||| | ||||||||| |||||||| |||||||| |||| |||| |||||||| || |
|
|
| T |
31174363 |
gaactcactaaaaaagtggttgcttattgcggaggattaccattggctcttgaagtccttggaagttacttatcaatgaggaaaaaactagaatggaaaa |
31174462 |
T |
|
| Q |
126 |
gtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatt |
225 |
Q |
| |
|
||| | | |||||| |||||| |||||| || | ||||| ||| ||||||| ||||| ||||| ||||| ||| | ||| ||| |||||||||||||| |
|
|
| T |
31174463 |
gtgcactatcaaaattagagaaaattcccaacaatcaagtgcaacagaaactgagaatcagctacgacggcttagaagattatactgaaaaggatatatt |
31174562 |
T |
|
| Q |
226 |
tcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaata |
316 |
Q |
| |
|
|||||||||||||| |||||| || || ||| |||| || ||||||| ||||||| ||||| ||||| ||| ||||||| ||||||||| |
|
|
| T |
31174563 |
tcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatggctgtgggcttcatgctgatattggaata |
31174653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 3400185 - 3399849
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaa |
125 |
Q |
| |
|
|||||| ||| |||||| |||| ||| || |||||||| ||||| ||||||||| |||||||| |||||||| ||||||| ||||||||| || |
|
|
| T |
3400185 |
gaactcactaaaaatgtagttggttattgcggaggattaccactggctcttgaagtccttggaagttacttatcaaagaggacaacccgagaatggagaa |
3400086 |
T |
|
| Q |
126 |
gtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatt |
225 |
Q |
| |
|
||| | | |||||| |||||| |||||| || | |||| ||| ||| | | ||||| |||||||| |||||| | ||| ||| ||||||| ||||| |
|
|
| T |
3400085 |
gtgcactatcaaaattagagaaaattcccaacaatgaagtgcaacagatattgagaatcagctatgatggtttacaagattatacacaaaaggacatatt |
3399986 |
T |
|
| Q |
226 |
tcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctc |
325 |
Q |
| |
|
|||||||||||||| |||||| || || ||| |||| || ||||||| ||||||| |||| ||||||||| ||||||| ||||||||| | ||||| |
|
|
| T |
3399985 |
tcttgacatatgttgtttcttgattggaaagaacagagctgatgttacagagatacttaatgcatgtggacttcatgctgatattggaatatctattctc |
3399886 |
T |
|
| Q |
326 |
gtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
3399885 |
atagagcgcagcctcctaaaagtcgaaaagaataaca |
3399849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 13807436 - 13807741
Alignment:
| Q |
53 |
tgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagag-agaatt |
151 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||| | | |||| |||| | | ||||| || ||| |||||| |
|
|
| T |
13807436 |
tgtggaggattaccactagctcttgaagaaattggatcttacttatttgataggacaaaacaacagtggaaaagtacactatcaaa-cttgaggagaatt |
13807534 |
T |
|
| Q |
152 |
cctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcg |
251 |
Q |
| |
|
|||||||| |||| ||| | ||||| | |||||||||||| |||||| | |||| |||| || ||||||||||||||| |||| ||||||||||| |
|
|
| T |
13807535 |
cctaatgataaagtgcaaaaaaaactgaaaataagctatgatggtttagattgtgattccgaaaggggtatatttcttgacatttgttgtttctttatcg |
13807634 |
T |
|
| Q |
252 |
gcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaaaaattga |
351 |
Q |
| |
|
| ||| | || ||||||||| | |||| ||| |||| ||||||||| ||||||| || |||||||| | ||| ||||||| |||||| ||||| | || |
|
|
| T |
13807635 |
gaaagaagagagcctatgtttcagagattctagatggttgtggacttaatgctgatatgggaataactatcctcatagagcggagccttctaaaagtcga |
13807734 |
T |
|
| Q |
352 |
aaagaat |
358 |
Q |
| |
|
||||||| |
|
|
| T |
13807735 |
aaagaat |
13807741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 14768482 - 14768146
Alignment:
| Q |
27 |
aactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaag |
126 |
Q |
| |
|
||||||| | ||| || |||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
14768482 |
aactctcaaaaaaggtagttgcttattgtggaggattgccattggctcttgaagtcattggatcttacttatatgggaggacaaaaccagaatgggaaag |
14768383 |
T |
|
| Q |
127 |
tgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatattt |
226 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||| ||||| || ||||||| || |||||||| | |||||| |||||||| | |||||||||||||| |
|
|
| T |
14768382 |
tgtactgtcaaaattaaagagaattcccaatgatcaagtgcatcagaaactgagtataagctacaatggtttagaggatgatttaaaaaaggatatattt |
14768283 |
T |
|
| Q |
227 |
cttgacatatgttttttctttatcggcaaggacagggcct-atgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctc |
325 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||| | ||||| ||||| ||||||| ||||||||||||||||| ||||||||| | || ||| |
|
|
| T |
14768282 |
cttgacatatgttttttctttattggcaaggatagagcctaacgttacagagatattaaatggatgtggactttatgctgatattggaatatctgtcctc |
14768183 |
T |
|
| Q |
326 |
gtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
|||| || ||||| ||||| ||| ||||||||||| |
|
|
| T |
14768182 |
atagaacggagcctcttaaaagttgtaaagaataaca |
14768146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 7821 - 7485
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaa |
125 |
Q |
| |
|
|||||||| | |||||| ||| |||||||||||| ||||| || ||||||||||| || |||||| |||||| || ||||||||| |||||||| || |
|
|
| T |
7821 |
gaactctcaaaaaatgtagttaattactgtggagggttgcccctagctcttgaaattctcggatctcacttatttgaaaggacaaaggaagaatggaaaa |
7722 |
T |
|
| Q |
126 |
gtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatt |
225 |
Q |
| |
|
|||| | |||||| |||| | |||||| |||| |||| ||||||||||| |||||||||||||| ||||| | || || | | |||||| |||||| |
|
|
| T |
7721 |
gtgtgctatcaaaattagaaaaaattccccatgaagaagtgcaagagaaactgagaataagctatgatggtttgacagaagacacgaaaaaggctatatt |
7622 |
T |
|
| Q |
226 |
tcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctc |
325 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||| |||||| ||||||||| | || ||| |
|
|
| T |
7621 |
tcttgatgtatgttgtttctttatcggcaaggacaaagactatgttaccgagatactaaatggttgtggactttttgctgatattggaatagctgtcctc |
7522 |
T |
|
| Q |
326 |
gtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||| | |||||| ||||| | ||||||||||||| |
|
|
| T |
7521 |
atagagaggagccttctaaaagtcgaaaagaataaca |
7485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 30416505 - 30416781
Alignment:
| Q |
86 |
ggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataa |
185 |
Q |
| |
|
|||||||| |||||||| ||||||| | ||||||||||||||| | ||||||||||||| ||||||| | | || || ||||||||||||||||||| |
|
|
| T |
30416505 |
ggatcttatttatatggcaggacaagagaagaatggacaagtgtgctatcaaaactagagataattcctgaccatcatgtgcaagagaaactaagaataa |
30416604 |
T |
|
| Q |
186 |
gctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaa |
285 |
Q |
| |
|
|||| || ||| ||| |||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||| |
|
|
| T |
30416605 |
gctacgatggtctaagtgatggtaagcaaaaggatatatttcttgacatatgttgtttctttatcggcaaggacagagcttatgttactgagattctaaa |
30416704 |
T |
|
| Q |
286 |
tgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||| |||||||||| |||| ||||||||| | || ||| ||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
30416705 |
tggctgtggactttttgctagtattggaatatctgtcctcatagagcggagcctcttaaaagttgaaaagaataaca |
30416781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 155 - 362
Target Start/End: Original strand, 15801625 - 15801832
Alignment:
| Q |
155 |
aatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggca |
254 |
Q |
| |
|
||||| ||| |||| |||||||||| |||||||| ||| |||||| ||||| ||||||||||| ||||||||||||| | |||| |||||||||||| | |
|
|
| T |
15801625 |
aatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggta |
15801724 |
T |
|
| Q |
255 |
aggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaaaaattgaaaa |
354 |
Q |
| |
|
|||| || || |||||||| ||||||||||||||||||||||| ||||||| ||||||||| || || ||||| ||||||| ||||| ||||||| |
|
|
| T |
15801725 |
aggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaa |
15801824 |
T |
|
| Q |
355 |
gaataaca |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
15801825 |
gaataaca |
15801832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 20810613 - 20810955
Alignment:
| Q |
20 |
tttaccgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaat |
119 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| || |||||| || || ||||||||| |||||||| |||||||| || ||||| || ||||| |
|
|
| T |
20810613 |
tttagcgaactctctagaaatgtagttgcttattgcaaaggattacccctggctcttgaagtccttggacgttacttatctgagaggacggaacaagaat |
20810712 |
T |
|
| Q |
120 |
ggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaagga |
219 |
Q |
| |
|
||| | ||| | | |||||| |||||| |||||| || | | || ||| ||| | | ||||| |||||||| |||||| | ||| ||| | ||||||| |
|
|
| T |
20810713 |
ggagatgtgcactatcaaaattagagaaaattcccaacaatgatgtgcaacagatattgagaatcagctatgatggtttagaagattatacgcaaaagga |
20810812 |
T |
|
| Q |
220 |
tatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacg |
319 |
Q |
| |
|
||||||||||||||||||| |||||| || || ||| |||| || ||||||| ||||||| ||||||||||||||| ||||| | | ||||||| | |
|
|
| T |
20810813 |
catatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatgggtgtggacttcatgcttatagtggaatatct |
20810912 |
T |
|
| Q |
320 |
gttctcgtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||| ||||||| ||||| |||||| | ||||||||||||| |
|
|
| T |
20810913 |
attctcatagagcgcagcctcgtaaaagtcgaaaagaataaca |
20810955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 20836968 - 20837310
Alignment:
| Q |
20 |
tttaccgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaat |
119 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| || |||||| || || ||||||||| ||||||||| |||||||| || ||||| ||| ||||| |
|
|
| T |
20836968 |
tttagcgaactctctagaaatgtagttgcttattgcaaaggattacccctggctcttgaagtccttggatgttacttatctgagaggacggaaaaagaat |
20837067 |
T |
|
| Q |
120 |
ggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaagga |
219 |
Q |
| |
|
||| | || | | || | |||||| |||||| || | | || ||| ||| | | ||||| |||||||| |||||| | ||| ||| | || |||| |
|
|
| T |
20837068 |
ggagagatgcactacaaatattagagaaaattcccaacaatgatgtgcaacagatattgagaatcagctatgatggtttagaagattatacgaaacagga |
20837167 |
T |
|
| Q |
220 |
tatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacg |
319 |
Q |
| |
|
||||||||||||||||||| |||||| || || ||| |||| || ||||||| ||||||| ||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
20837168 |
catatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatgggtgtggacttcatgctgatattggaatatct |
20837267 |
T |
|
| Q |
320 |
gttctcgtagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||| ||||||| ||||| |||||| | ||||||||||||| |
|
|
| T |
20837268 |
attctcatagagcgcagcctcgtaaaagtcgaaaagaataaca |
20837310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 318
Target Start/End: Original strand, 12596389 - 12596536
Alignment:
| Q |
171 |
agaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgt |
270 |
Q |
| |
|
||||||||| |||||| | || ||||||| |||| |||||||||||||||||||||||| || |||| |||||||||||| ||||| || || ||||| |
|
|
| T |
12596389 |
agaaactaaaaataagtttcgaaggtttaagggatcgtatggaaaaggatatatttcttgatatttgttgtttctttatcggtaaggatagtgcttatgt |
12596488 |
T |
|
| Q |
271 |
taccaagatactaaatgggtgtggactttatgctgacattggaataac |
318 |
Q |
| |
|
||| |||||||||||||||||| ||| | || || ||||||||||| |
|
|
| T |
12596489 |
tacagagatactaaatgggtgtgatcttcaagcggatattggaataac |
12596536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 8876388 - 8876450
Alignment:
| Q |
282 |
taaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaa |
344 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||| ||||| || || ||||||||||||| |
|
|
| T |
8876388 |
taaatgggtgtgaactttatcctgaaattggaataagtgttcttgttgaacgaagccttgtaa |
8876450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 8373294 - 8372959
Alignment:
| Q |
27 |
aactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaag |
126 |
Q |
| |
|
|||||||||||||||| ||| |||| || |||||| ||||| ||||||||| |||||||||||||||||| | |||||| || |||||||| ||| |
|
|
| T |
8373294 |
aactctctagaaatgtggtttcttattgcaaaggattaccactagctcttgaagtccttggatcttacttatctaagaggacagaacaagaatggagaag |
8373195 |
T |
|
| Q |
127 |
tgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatattt |
226 |
Q |
| |
|
|| ||| |||||| || || |||||| || || |||| | | ||| | | ||||| |||||||| |||||| | ||| ||| ||||||||||||||| |
|
|
| T |
8373194 |
tgcattatcaaaattaacgaaaattcccaacaacgaagtgctacagatattgagaatcagctatgatggtttagaagattatacagaaaaggatatattt |
8373095 |
T |
|
| Q |
227 |
cttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcg |
326 |
Q |
| |
|
||||||||||||| |||||| || || ||| |||| | |||| || |||| || ||||| ||||||||| ||||||| |||||| || | ||||| |
|
|
| T |
8373094 |
cttgacatatgttgtttcttcattggaaagaacagagttgatgtcacagagatccttaatggttgtggacttcatgctgatattggagtatctgttctta |
8372995 |
T |
|
| Q |
327 |
tagagcgaagccttgtaaaaattgaaaagaataaca |
362 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||||||| |
|
|
| T |
8372994 |
tagagcgtagcctcataaaagttgataagaataaca |
8372959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 36215445 - 36215247
Alignment:
| Q |
146 |
agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct |
245 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||| ||| |||||||| ||| |||| ||||| | ||| || || ||||| ||||||||| || ||||| |
|
|
| T |
36215445 |
agaattcccaatgaccaagtacaaaagaagttaaaaatgagctatgaaggtctaaatgatgacacggagaaagaaatattccttgacatagcttgtttct |
36215346 |
T |
|
| Q |
246 |
ttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaa |
344 |
Q |
| |
|
|||| || | |||||| |||||| | ||| ||||||| ||| ||||| ||| || |||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
36215345 |
ttattgggatggacagaaatgatgttatacatatattaaatggaagtgaactttttgcagaaattggagtaagtgttcttgtagagcgaagccttgtaa |
36215247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 5356169 - 5355971
Alignment:
| Q |
146 |
agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct |
245 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||| |||||| || || || ||||||||||||||| || ||||| |
|
|
| T |
5356169 |
agaattcctaacaaccaagtacaaaagaaactaaaaataagctatgatggtttaaatgatgatgccgagaaagaaatatttcttgacatagcttgtttct |
5356070 |
T |
|
| Q |
246 |
ttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaa |
344 |
Q |
| |
|
|||| || | ||| | ||| ||| ||| ||||||| ||||||||||||||||| |||||||||| |||| || |||||||||||||||| |
|
|
| T |
5356069 |
ttattgggatcgaccgaaatgatgctacactaatattaaatggatgtggactttatgctgaaattggaataagtattcttgttgagcgaagccttgtaa |
5355971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 317
Target Start/End: Original strand, 5424171 - 5424373
Alignment:
| Q |
115 |
agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa |
214 |
Q |
| |
|
|||||||| ||||| |||| |||||| | |||||||||||| | |||||||| ||||| |||||||||||||||| | |||||| ||||||| || |
|
|
| T |
5424171 |
agaatggaaaagtgcattggaaaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag |
5424270 |
T |
|
| Q |
215 |
aaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggtgtggactttatgctgacattggaa |
314 |
Q |
| |
|
|| || ||||| ||||||||| || ||||||||| || | |||||| ||||||| ||| ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
5424271 |
aaagaaatattccttgacatagcttgtttctttattggaatggacagaaatgatgttacacttatattaaatggatgtggactttttgctgaaattggaa |
5424370 |
T |
|
| Q |
315 |
taa |
317 |
Q |
| |
|
||| |
|
|
| T |
5424371 |
taa |
5424373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 5068658 - 5068524
Alignment:
| Q |
115 |
agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa |
214 |
Q |
| |
|
|||||||| |||||||||| ||||| | |||||||||||| | |||||||| ||||| |||||||||||||||| | |||||| ||||||| || |
|
|
| T |
5068658 |
agaatggaaaagtgtattggacaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag |
5068559 |
T |
|
| Q |
215 |
aaggatatatttcttgacatatgttttttctttat |
249 |
Q |
| |
|
|| || ||||| ||||||||| || ||||||||| |
|
|
| T |
5068558 |
aaagaaatattccttgacatagcttgtttctttat |
5068524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 5175306 - 5175377
Alignment:
| Q |
137 |
aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat |
208 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||| ||| |||||||||||| |||||| | |||||| |
|
|
| T |
5175306 |
aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat |
5175377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 5277133 - 5277204
Alignment:
| Q |
137 |
aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat |
208 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||| ||| |||||||||||| |||||| | |||||| |
|
|
| T |
5277133 |
aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat |
5277204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 5342279 - 5342341
Alignment:
| Q |
282 |
taaatgggtgtggactttatgctgacattggaataacggttctcgtagagcgaagccttgtaa |
344 |
Q |
| |
|
||||||| |||||||||| ||| || |||||||||| ||||| || |||||||||||||||| |
|
|
| T |
5342279 |
taaatggctgtggactttttgcagaaattggaataagtgttcttgttgagcgaagccttgtaa |
5342341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 5104425 - 5104364
Alignment:
| Q |
146 |
agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatga |
207 |
Q |
| |
|
|||||||||||| | ||||||||| |||| ||||||||||||| || |||||||| ||||| |
|
|
| T |
5104425 |
agaattcctaataatcaagtacaaaagaagttaagaataagctacgatggtttaaatgatga |
5104364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 5133458 - 5133369
Alignment:
| Q |
146 |
agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacata |
235 |
Q |
| |
|
|||||||||||| | ||||||||| |||| |||| |||||||||||| | |||||| || ||||| || || || ||||| ||| ||||| |
|
|
| T |
5133458 |
agaattcctaataatcaagtacaaaagaagctaaaaataagctatgatgctttaaatgaagatattgagaaagaaatattccttaacata |
5133369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6665703 - 6665764
Alignment:
| Q |
26 |
gaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttgg |
87 |
Q |
| |
|
||||| |||||| | || |||||||| ||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
6665703 |
gaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgg |
6665764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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