View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_low_5 (Length: 363)
Name: NF16409_low_5
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 14812581 - 14812918
Alignment:
| Q |
9 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812581 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
14812680 |
T |
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| Q |
109 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812681 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
14812780 |
T |
|
| Q |
209 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctatgcttctaacatagagattcactactt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||| |
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| T |
14812781 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactt |
14812878 |
T |
|
| Q |
309 |
tctgtattgtaaggagtccattaggatatgtagagaaaat |
348 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
14812879 |
tctgtattgtaaagagtccattaggatatgtagagaaaat |
14812918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 15259576 - 15259913
Alignment:
| Q |
9 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259576 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
15259675 |
T |
|
| Q |
109 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259676 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
15259775 |
T |
|
| Q |
209 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctatgcttctaacatagagattcactactt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||| |
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| T |
15259776 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactt |
15259873 |
T |
|
| Q |
309 |
tctgtattgtaaggagtccattaggatatgtagagaaaat |
348 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
15259874 |
tctgtattgtaaagagtccattaggatatgtagagaaaat |
15259913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 17521599 - 17521262
Alignment:
| Q |
9 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521599 |
acatcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
17521500 |
T |
|
| Q |
109 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17521499 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
17521400 |
T |
|
| Q |
209 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctatgcttctaacatagagattcactactt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||| |
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| T |
17521399 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactt |
17521302 |
T |
|
| Q |
309 |
tctgtattgtaaggagtccattaggatatgtagagaaaat |
348 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
17521301 |
tctgtattgtaaagagtccattaggatatgtagagaaaat |
17521262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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