View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16409_low_9 (Length: 300)
Name: NF16409_low_9
Description: NF16409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16409_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 38013523 - 38013259
Alignment:
| Q |
20 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
119 |
Q |
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| T |
38013523 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
38013424 |
T |
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| Q |
120 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttattgttgcagcagtcagtgtttggatccca |
219 |
Q |
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| T |
38013423 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttgttgttgcagcagtctgtgtttggatccca |
38013324 |
T |
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| Q |
220 |
tgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
284 |
Q |
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| T |
38013323 |
tgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
38013259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 37697567 - 37697804
Alignment:
| Q |
20 |
atagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaa |
119 |
Q |
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| T |
37697567 |
atagtgccgacgaggttggggatgcgggagagagagaaatcgtcaagaaaagggaggttagtgatggagggtggaaatggaacaggtttagggaggttga |
37697666 |
T |
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| Q |
120 |
ggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttattgttgcagcagtcagtgtt---tggatc |
216 |
Q |
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| T |
37697667 |
ggtcgtcgagaccaaggttggcgactcggt------------ctgagtcgcatgagacacccttccatttgtcgttgcagcagtcattgttgtttggatc |
37697754 |
T |
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| Q |
217 |
ccatgaagagagttggctagggttgccaaattcttttttgatttggagta |
266 |
Q |
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| T |
37697755 |
ccatgaagagagtttggttgggttgccaaattcttttttgatttggagta |
37697804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 37989634 - 37989542
Alignment:
| Q |
192 |
tgttgcagcagtcagtgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctg |
284 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
37989634 |
tgttacagcagtcgatggttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagtagggttcttttgtcatctg |
37989542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 37993823 - 37993735
Alignment:
| Q |
193 |
gttgcagcagtcagtgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcat |
281 |
Q |
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| T |
37993823 |
gttgcagcagtcggtagttgaatcccatgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggtttttttgtcat |
37993735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 37993945 - 37993874
Alignment:
| Q |
65 |
aggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaaggttctcgagatcaagg |
136 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||| ||||| |||| || |||||||||| |
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| T |
37993945 |
aggaaagggaggttgaatatggagggtggaattggaacagggtgaggaaggtcgaggtcctggagatcaagg |
37993874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 18138386 - 18138354
Alignment:
| Q |
247 |
ttcttttttgatttggagtagggttcttttgtc |
279 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
18138386 |
ttctttcttgatttggagtagggttcttttgtc |
18138354 |
T |
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