View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_high_1 (Length: 511)
Name: NF1640_high_1
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 200 - 497
Target Start/End: Complemental strand, 16513157 - 16512864
Alignment:
| Q |
200 |
tatatatcattataaataaattcagacatgcatattgaaagggacacagtgcacatgaagtgagaatgactaccttccttctttatcctttgtttccttg |
299 |
Q |
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| T |
16513157 |
tatatatcattataaataaattcaggcatgcatattgaaagagacacagtgcacatgaagtgagaatgactaccttccttctttatcctttgtttcctta |
16513058 |
T |
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| Q |
300 |
gttctccttaacatcaatgtcctcaaaattcccttgaccaatttcagggctctttgatcaccctgctcatagggcttttgaaccaacttagtccacctat |
399 |
Q |
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| T |
16513057 |
gttctccttaacatcaatgtcctcaaaattcccttgaccaattttagggctctttgatcaccctgctcatagggcttttgaaccaacttagtccacctat |
16512958 |
T |
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| Q |
400 |
acagaagcaaattaaaataagtaacaaacagaactgtggagtaaaggacttaaaaaactcaacaatgatcaaatttacactagttacaagttagcata |
497 |
Q |
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| T |
16512957 |
atagaagcaaattaaaaaaagtaacaatcagaactgtgaaataaaggtcttaaa----taaacaatgatcaaatttagactagttacaaattagcata |
16512864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 16513310 - 16513250
Alignment:
| Q |
18 |
attctgactgttcacactcaatcaattgaatatcagttggtggtaggacaagtataggcct |
78 |
Q |
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| T |
16513310 |
attctgactgctcacactcaatcaattgaatatcagttggtggcaggacaagtataggcct |
16513250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 35532945 - 35533006
Alignment:
| Q |
17 |
aattctgactgttcacactcaatcaattgaatatcagttggtggtaggacaagtataggcct |
78 |
Q |
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| T |
35532945 |
aattctgactgttctcactcaaacatttgaatatcaattggtggcaggacaagtataggcct |
35533006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 19933824 - 19933787
Alignment:
| Q |
43 |
ttgaatatcagttggtggtaggacaagtataggcctgc |
80 |
Q |
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| T |
19933824 |
ttgaatatcagttggtggcaggacaagtataggcctgc |
19933787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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