View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_high_11 (Length: 322)
Name: NF1640_high_11
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 52532878 - 52533003
Alignment:
| Q |
181 |
tgagaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaannnnnnnatcaaggaattgcaacttttc |
280 |
Q |
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| T |
52532878 |
tgagaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaa-ttttttatcaaggaattgcaacttttc |
52532976 |
T |
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| Q |
281 |
atcaaggaattgcagattaatttttct |
307 |
Q |
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| T |
52532977 |
atcaaggaattgcagattaatttttct |
52533003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 32396594 - 32396556
Alignment:
| Q |
202 |
aaggaattgcagcttgataccaaggtagtcataattcac |
240 |
Q |
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| T |
32396594 |
aaggaattgcagcttgataccaaggtactcatcattcac |
32396556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 43434420 - 43434295
Alignment:
| Q |
181 |
tgagaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaannnnnnnatcaaggaattgcaacttttc |
280 |
Q |
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| T |
43434420 |
tgagaatcaaagcttttcatcaaggaattgcaacttgataccaaggtagtcataattcacaaccttggttaa-ttttttatcaaggaattgtaacttttc |
43434322 |
T |
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| Q |
281 |
atcaaggaattgcagattaatttttct |
307 |
Q |
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| T |
43434321 |
atcaaggaattgcaaattaatttttct |
43434295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 10501803 - 10501707
Alignment:
| Q |
7 |
caccaccaccaaaacacatcgtcttcttcaacgttgttatcttcctcacaaacaatagttaaatttatttattatccaaatctagtgaaatttctca |
103 |
Q |
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| T |
10501803 |
caccaccaccaaaacacattgtcttcttcaaccttgttatattcctcacaaacaatagttaaatttatttattatccaaatctaatgaaatttctca |
10501707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 10501629 - 10501558
Alignment:
| Q |
181 |
tgagaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaa |
252 |
Q |
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| T |
10501629 |
tgagaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaa |
10501558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 35759141 - 35759093
Alignment:
| Q |
3 |
ccaccaccaccaccaaaacacatcgtcttcttcaacgttgttatcttcc |
51 |
Q |
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| T |
35759141 |
ccaccaccaccaccaaaacactttgtcttcttcaaccttgttgtcttcc |
35759093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 41348272 - 41348317
Alignment:
| Q |
6 |
ccaccaccaccaaaacacatcgtcttcttcaacgttgttatcttcc |
51 |
Q |
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| T |
41348272 |
ccaccaccaccaaaacactttgtcttcttcaactttgttgtcttcc |
41348317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 40450783 - 40450735
Alignment:
| Q |
52 |
tcacaaacaatagttaaatttatttattatccaaatctagtgaaatttc |
100 |
Q |
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| T |
40450783 |
tcacaaacaataattaaatttatttatcctccaaatctaatgaattttc |
40450735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 8653042 - 8653087
Alignment:
| Q |
55 |
caaacaatagttaaatttatttattatccaaatctagtgaaatttc |
100 |
Q |
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|||||| || |||||||||||||||||||||||||| |||| |||| |
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| T |
8653042 |
caaacagtaattaaatttatttattatccaaatctaatgaattttc |
8653087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 36391201 - 36391249
Alignment:
| Q |
52 |
tcacaaacaatagttaaatttatttattatccaaatctagtgaaatttc |
100 |
Q |
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| T |
36391201 |
tcacaaacaatatttaaatttatttatcctccaaatctaatgaattttc |
36391249 |
T |
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