View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1640_high_12 (Length: 310)

Name: NF1640_high_12
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1640_high_12
NF1640_high_12
[»] chr8 (5 HSPs)
chr8 (170-293)||(44915543-44915666)
chr8 (1-121)||(44915375-44915494)
chr8 (211-293)||(7749368-7749449)
chr8 (32-101)||(7749215-7749283)
chr8 (172-209)||(7749318-7749355)
[»] chr5 (3 HSPs)
chr5 (29-121)||(2339082-2339173)
chr5 (212-293)||(2339254-2339334)
chr5 (172-210)||(2339188-2339226)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 44915543 - 44915666
Alignment:
Q  170 ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaag 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915543 ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaag 44915642  T
Q  270 accccaacaatgagtggagttgct 293  Q
    ||||||||||||||||||||||||    
T  44915643 accccaacaatgagtggagttgct 44915666  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 44915375 - 44915494
Alignment:
Q  1 ctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttagaccgtcttcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  44915375 ctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggact-aagttctagaccgtcttcaatga 44915473  T
Q  101 aaaatgcatctggagcattac 121  Q
    |||||||||||||||||||||    
T  44915474 aaaatgcatctggagcattac 44915494  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 7749368 - 7749449
Alignment:
Q  211 acaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagttgct 293  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||  |||||||||||||||||    
T  7749368 acaaaggcaacaacaggcacacctagctgcaaaacggaga-tctaattcccttcccaagacacctgcaatgagtggagttgct 7749449  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 7749215 - 7749283
Alignment:
Q  32 attatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttagaccgtcttcaatgaa 101  Q
    ||||||||||||||| |||||||||||||| |||||||||||||   |||||| |||| |||||||||||    
T  7749215 attatcttcaaaatcaggtgaattttctaacggttcagttggac-ccagttttggaccatcttcaatgaa 7749283  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 7749318 - 7749355
Alignment:
Q  172 gcaatggcttcacatacagctgctgttggaactccatc 209  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  7749318 gcaatggcttcacttactgctgctgttggaactccatc 7749355  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 2339082 - 2339173
Alignment:
Q  29 gctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttagaccgtcttcaatgaaaaatgcatctggagcattac 121  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| |||| |||||| |||| |||||||| ||||||||||    
T  2339082 gctattatcttcaaaatctggtgaattttctaatggttcagttggac-caagttttggaccatcttcagtgaacaatgcatcaggagcattac 2339173  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 2339254 - 2339334
Alignment:
Q  212 caaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagttgct 293  Q
    ||||||||||||||| ||||||||||||||||| ||  | ||||||||| |||||||||||||| |||||||||||||||||    
T  2339254 caaaggcaacaacaggcacacctagctgcaaaacgggga-tctaattcctttcccaagaccccatcaatgagtggagttgct 2339334  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 2339188 - 2339226
Alignment:
Q  172 gcaatggcttcacatacagctgctgttggaactccatct 210  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  2339188 gcaatggcttcacgtactgctgctgttggaactccatct 2339226  T

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