View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640_high_15 (Length: 295)
Name: NF1640_high_15
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 5916878 - 5917147
Alignment:
| Q |
16 |
cattaatgtcttgtctttgaacttacacttttcctggtaagggtaagaaaagtaaactaatcttcccaacttaaattccttccactgatcagcatcatgg |
115 |
Q |
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| T |
5916878 |
cattaatgtcttgtctttgaacttacacttttcctggtaagggtaagaaaagtaaactaatcttcccaacttaaattcctttcactgatcagcatcatgg |
5916977 |
T |
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| Q |
116 |
gactgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatatacgtcggaagctgatcatatggtgattaat |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5916978 |
gattgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatatacgtcggaagctgatcatatggtgattaat |
5917077 |
T |
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| Q |
216 |
cagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcca-tttcatacttgattcat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
5917078 |
cagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcgattttcatacttgattcat |
5917147 |
T |
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